Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1794 132 5e-26 seq1925 123 2e-23 >seq1794 Length=856596 Score = 132 bits (146), Expect = 5e-26 Identities = 208/298 (70%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 |||||| || || || || || || || || || || |||| ||| | |||| ||||| Sbjct 303655 CTACATTCGTGGCACAAACGGGACTTCTAATGGGATCATCCCGATGTTGAGGGTATTCAA 303714 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 || | || || ||||| ||||||||||| || | ||||||||| ||||||| |||| Sbjct 303715 TGACACAGCTCGGTACGTCGACCAGGGTGGCGGCAAGAGGAAGGGCGCTTTCGCTATCTA 303774 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 ||| ||||| ||||| || || | | || | || || | ||||| || || || Sbjct 303775 TCTGGAGCCGTGGCATGCCGATATATTCGATTGGCTGGATCTTAGGAAGAATCATGGGAA 303834 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || | ||||| |||| || ||||| | ||| ||| | ||||||||||| |||| Sbjct 303835 GGAGGAAAATAGGGCTCGAGATCTATTCTATGGTCTGTGGATTCCAGACCTTTTCATGAG 303894 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 ||| || | | || || ||| |||||| || |||||||| ||| |||||| Sbjct 303895 ACGTGTGCAAGAGAATGGCGTATGGTCTCTTTTCTGCCCCAATGAGGCTCCAGGACTG 303952 >seq1925 Length=1847415 Score = 123 bits (136), Expect = 2e-23 Identities = 208/300 (69%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 ||||||||| || |||||||| || ||||| || | |||| ||||| |||| || || Sbjct 481596 CTACATCCGGGGCACCAATGGAACTTCCAATGGTATAATCCCCATGCTGAGGGTGTTTAA 481537 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 || | || || || || ||||||||||| || | |||||||||| | || || | || Sbjct 481536 TGACACTGCCCGGTATGTTGACCAGGGTGGCGGTAAGAGGAAGGGTGCGTTTGCAATTTA 481477 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 || || |||||||| || || | | | | ||||| |||||||||||||| || Sbjct 481476 CCTTGAACCCTGGCATGCAGATATCTTCGAATGGTTGGACCTTCGAAAGAACCACGGGAA 481417 Query 94251 CGATCTGGA---GAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 || ||| || || | || | ||||| | || ||| | || |||||||| || Sbjct 481416 GGA---GGAAAGTAGAGCTCGGGATTTGTTCTATGGACTTTGGATCCCCGACCTTTTCAT 481360 Query 94308 GAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367 | |||| ||| | || || | | ||| ||| || || ||||||||| || ||||| Sbjct 481359 GCAACGTGTCCAAAATAATGGCACATGGTCTCTGTTCTGCCCCAATGAAGCGCCAGGACT 481300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494710893760400