Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1657 116 4e-21 seq1957 105 7e-18 seq1943 105 7e-18 seq1705 105 7e-18 seq1660 105 7e-18 seq1748 93.3 4e-14 seq1917 91.5 1e-13 seq1639 91.5 1e-13 seq1814 82.4 8e-11 >seq1657 Length=432565 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | |||| || ||||| | | | ||||| || || ||||||||||| Sbjct 17393 GCCACCTCGAAGGCGCAGCACCAAATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCAGC 17334 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || |||||||| || || |||| |||| |||||||| ||||||||||| Sbjct 17333 CAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 17274 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTT-AATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| |||| ||||| | | || | ||||| | ||| | Sbjct 17273 AATTCCCTCCTTGTC-TTGAATTTTGGTTTTCACATTATCGATAGTGTCAGAACTCTCGA 17215 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||||| ||| | || || || ||||| || || || || |||||||||| Sbjct 17214 CCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGG 17164 >seq1957 Length=2436183 Score = 105 bits (116), Expect = 7e-18 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||| | || || || | | | |||||||| || |||||||||||| Sbjct 68984 CCGCCCCGCAGACGGAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 68925 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || || |||| |||| || | ||| ||||| ||||| Sbjct 68924 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGG 68865 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || || || |||| || | ||||||| ||||| | Sbjct 68864 ATGCCCTCCTTGTC-CTGAATCTTCGTCTTCACATTG-TCGATAGTGTCGGAGGACTCGA 68807 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||||| || | || || || ||||| || || || || |||||||||| Sbjct 68806 CCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGG 68756 >seq1943 Length=2190071 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| ||||| ||| || |||||| |||||| | || || || | Sbjct 1470721 GACTCCTTTTGAATATTGTAATCGGCCAGAGTACGACCGTCCTCTAACTGCTTCCCAGCG 1470662 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || |||||||| ||||| ||||| ||||||||||| || || |||| || || | Sbjct 1470661 AAAATCAGACGCTGCTGGTCAGGAGGGATACCTTCTTTATC-CTGGATTTTGGTCTTCAC 1470603 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| || | ||| ||||| | || | || || ||||||| ||| | Sbjct 1470602 GTTG-TCTATGGTATCAGAGCTCTCAACCTCTAGAGTAATTGTCTTGCCAGTCAAAGTCT 1470544 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 1470543 TCACAAAAATCTGCAT 1470528 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| |||| || || || | | | |||||||| ||||||||||| || | Sbjct 1470298 CCTCCTCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 1470239 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || ||||| || |||| | |||| || | ||| || ||||| || Sbjct 1470238 AAAGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGATCCGGGGGA 1470179 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || || || | ||| || | |||||| | |||| Sbjct 1470178 ATTCCTTCTTTGTC-CTGAATCTTAGTCTTCACGTTG-TCGATGGTGTCAGAACTTTCCA 1470121 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || || |||| || || ||||| || ||||| Sbjct 1470120 CTTCTAATGTGATAGTCTTCCCCGTCAACGTCTTAACAAATATTTGCAT 1470072 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | || ||||| || | || | | |||||||| ||||||||||| ||| | Sbjct 1470070 CCGCCCCTCAGGCGCAACACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATCGGCC 1470011 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||||| ||||| | || || |||| | | || | || || ||||| || || Sbjct 1470010 AGAGTACGCCCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGCTGGTCAGGTGGA 1469951 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| | || || |||| | || | || || | ||| || Sbjct 1469950 ATACCTTCTTTGTC-TTGAATCTTCGTCTTAACGTTATCAATAGTATCTGAGCTCTCAAC 1469892 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || ||||| ||||| || || || |||||| Sbjct 1469891 TTCCAACGTAATCGTCTTCCCCGTCAGCGTTTTGACGAATATTTGCATG 1469843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||| || || | |||||| || || || ||||| || | | Sbjct 1470949 GACTCCTTCTGAATGTTATAATCAGCAAGAGTACGACCATCTTCCAGCTGTTTGCCCGCA 1470890 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | || || ||||| ||||| |||||||| || || ||| || || |||| Sbjct 1470889 AAGATCAACCGTTGCTGGTCGGGAGGAATACCTTCCTTATCCTGGATCTTA-GTCTTAAC 1470831 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | || || | ||| ||||| | || | ||||| ||||||||||| || Sbjct 1470830 ATTATCAATAGTATCAGAGCTCTCAACCTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTT 1470771 Query 138600 TACAAAAATCTGCAT 138614 ||||||||||||||| Sbjct 1470770 TACAAAAATCTGCAT 1470756 >seq1705 Length=561313 Score = 105 bits (116), Expect = 7e-18 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || || || | | |||||||| || ||||||||||| Sbjct 93159 GCCACCCCGAAGACGCAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCAGC 93218 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || ||||| || || |||| | || ||||||||||| || ||||| Sbjct 93219 CAGGGTGCGACCATCTTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGTTGATCGGGAGG 93278 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| |||||||||| |||| || | || || | ||||| Sbjct 93279 AATGCCCTCCTTGTC-CTGAATTTTTGTTTTCACATTG-TCGATAGTATCAGAGGACTCG 93336 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| | ||| | || || || ||||| || || || || |||||||||||| Sbjct 93337 ACCTCAAGCGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATGGCT 93390 >seq1660 Length=444603 Score = 105 bits (116), Expect = 7e-18 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||| | || || || | | | |||||||| || |||||||||||| Sbjct 434466 CCGCCCCGCAGACGGAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 434525 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || || |||| |||| || | ||| ||||| ||||| Sbjct 434526 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGG 434585 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || || || |||| || | ||||||| ||||| | Sbjct 434586 ATGCCCTCCTTGTC-CTGAATCTTCGTCTTCACATTG-TCGATAGTGTCGGAGGACTCGA 434643 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||||| || | || || || ||||| || || || || |||||||||| Sbjct 434644 CCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGG 434694 >seq1748 Length=695821 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || |||||||||||| Sbjct 274545 CCTCCCCGAAGACGAAGCACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 274604 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| ||||| |||| |||| || | ||| ||||| || || Sbjct 274605 AGAGTTCGGCCATCCTCGAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGCGGA 274664 Query 138508 ATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || | || |||| || | || || | ||||| || Sbjct 274665 ATGCCCTCCTTGTCCTGGATCTTCGTCTTCACATTG-TCGATAGTATCAGAGGACTCGAC 274723 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||||| || | || || || ||||| || || ||||| |||||||||| Sbjct 274724 CTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGG 274773 >seq1917 Length=1730829 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||||||| || | |||||||| | | |||| || ||||| ||||||||||| Sbjct 508129 GCCACCTCGCAATCGTAGGACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCTGC 508070 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| | |||||| |||| | || || | || || || ||||| Sbjct 508069 CAAGGTGCGACCATCCTCCAATTGTTTGCCGGCGAAAATAAGCCTTTGCTGATCGGGAGG 508010 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| ||||| ||| | || || |||| ||| || | ||||| | |||| Sbjct 508009 AATGCCTTCCTTGTC-TTGAATCTTCGTCTTAACGTTG-TCAATCGTGTCAGAGCTCTCC 507952 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| | || | || || || |||| || || ||||| || |||||| Sbjct 507951 ACCTCCAAGGTGATAGTCTTCCCCGTCAACGTCTTCACAAAGATTTGCATG 507901 >seq1639 Length=407714 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 |||||| || || || | | | |||||||| || |||||||||||| | || || Sbjct 35087 ACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCC 35028 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||||| || || || || | | | || | ||||| ||||| ||||| || || || || Sbjct 35027 ATCCTCTAGCTGCTTTCCAGCAAATATCAATCGCTGCTGGTCAGGAGGAATTCCCTCCTT 34968 Query 138519 GTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTC 138576 ||| ||| | || || |||| ||| || | ||||||| ||| ||||| | || Sbjct 34967 GTC-CTGAATCTTGGTCTTAACGTTG-TCAATTGTGTCGGAGCTCTCGACCTCCAAGGTG 34910 Query 138577 AGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||| || || || || ||||| || ||||||||||| Sbjct 34909 ATCGTCTTGCCCGTTAGGGTTTTCACGAAAATCTGCAT 34872 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 |||||| || || || | | | |||||||| || |||||||||||| | || || Sbjct 34859 ACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACC 34800 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||||| || || || |||| | |||| ||||| ||||| ||||| || || || || Sbjct 34799 ATCCTCCAGCTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATTCCCTCCTT 34740 Query 138519 GTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTC 138576 ||| ||| | || || || | ||| || | ||| || | ||| ||||| | || Sbjct 34739 GTC-CTGAATCTTGGTCTTGACGTTG-TCGATGGTATCCGAGCTCTCGACCTCCAAGGTA 34682 Query 138577 AGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || ||||||||||| || || |||||||| Sbjct 34681 ATTGTCTTCCCCGTCAGAGTTTTCACGAAGATCTGCAT 34644 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||| || || || || | | Sbjct 35293 GACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCTAGCTGCTTTCCAGCA 35234 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | ||||| ||||| ||||| || || || ||||| ||| | || || |||| Sbjct 35233 AATATCAATCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTC-CTGAATCTTGGTCTTAAC 35175 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| ||| ||||| | || | ||| || || || || |||| Sbjct 35174 GTTG-TCAATTGTGTCGGAGCTCTCGACCTCCAAGGTGATCGTCTTGCCCGTTAGGGTTT 35116 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 35115 TCACGAAAATCTGCAT 35100 >seq1814 Length=924488 Score = 82.4 bits (90), Expect = 8e-11 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || || || | | | || |||||||| ||||||||||| || ||||| Sbjct 463762 CGCAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGCCAATGTACGACCA 463703 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| | ||| || || | |||| |||||||| |||||||| || || || || ||| Sbjct 463702 TCCTCCAATTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTG 463643 Query 138520 TCGGTGATTTTTTGT-TTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 || ||| | || || |||| |||| || | || || | ||| ||||||| || | Sbjct 463642 TC-CTGAATCTTCGTCTTTACATTG-TCAATTGTATCCGAGCTCTCGACCTCGAGGGTAA 463585 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || || || |||| || || || || ||||||||| || Sbjct 463584 TTGTCTTCCCCGTCAAGGTCTTCACGAAGATCTGCATGCCT 463544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250055472800