Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1917 113 4e-20 seq1943 109 5e-19 seq1860 102 7e-17 seq1901 98.7 9e-16 seq1972 93.3 4e-14 seq1762 82.4 7e-11 >seq1917 Length=1730829 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| | | ||| || || |||| || ||||||||||||||||| ||||| Sbjct 508359 ATTCCTCCGCGCAAACGCAAGACCAGGTGCAAGGTCGATTCCTTTTGGATATTGTAATCA 508300 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || ||||| || || || | ||||| || ||||| || ||| Sbjct 508299 GCAAGGGTGCGGCCATCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGCTGATCGGGC 508240 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||| | |||| || | || | || | ||||| || || Sbjct 508239 GGAATCCCTTCCTTGTCTTGGA-TTTTCGTCTTCACGTTGTCAATTGTGTCAGAGCTTTC 508181 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 508180 GACCTCAAGCGTGATTGTTTTACCGGTCAAGGTTTTAACAAAGATTTGCAT 508130 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | || ||| | |||| || || ||||| ||||| || |||||| Sbjct 507675 ATCCCTCCACGGAGACGCAGCACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCG 507616 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || ||||| | || | | ||||||||||||| Sbjct 507615 GCCAAAGTGCGACCATCTTCCAACTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCCGGC 507556 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || |||||||| || ||||| || | || | |||||||| ||| Sbjct 507555 GGTATGCCCTCCTTGTCTTGAATCTTGGCTTTGA-CGTTGTCGATAGTGTCGGAGCTCTC 507497 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || || | || || || || | ||| || ||||| || |||||| Sbjct 507496 GACCTCAAGGGTGATGGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCATC 507445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||||| |||||||| |||||||| || || || | ||| | ||| ||| Sbjct 508110 ACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCTGCCAAGGTGCGACCATCCTCC 508051 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || ||| | || | | |||||| || || ||||||||||| || |||||| Sbjct 508050 AATTGTTTGCCGGCGAAAATAAGCCTTTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGA 507991 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 | | || || | | || | || | ||||| || ||| || || | || | || || Sbjct 507990 A-TCTTCGTCTTAACGTTGTCAATCGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTCTT 507932 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || || ||||| |||||||| Sbjct 507931 CCCCGTCAACGTCTTCACAAAGATTTGCAT 507902 >seq1943 Length=2190071 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| || || ||||| || ||||| || || || |||||| | || ||| Sbjct 1470056 CAACACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATCGGCCAGAGTACGCCCATC 1469997 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 ||||| || ||||| || | ||||||||||||||||| || ||||| |||||||| || Sbjct 1469996 CTCCAACTGCTTTCCGGCAAAAATCAATCGTTGCTGGTCAGGTGGAATACCTTCTTTGTC 1469937 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 ||||| | || || | | || | || | || || || ||| ||||| | |||| || Sbjct 1469936 TTGAA-TCTTCGTCTTAACGTTATCAATAGTATCTGAGCTCTCAACTTCCAACGTAATCG 1469878 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || ||||| || || |||||||| Sbjct 1469877 TCTTCCCCGTCAGCGTTTTGACGAATATTTGCAT 1469844 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | | ||| ||||||| || || ||||| || || |||||||| Sbjct 1470982 CCTCCTCTGAGGCGAAGCACCAGATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGCA 1470923 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| |||| ||||| || || | ||||| ||||||||||| || ||| Sbjct 1470922 AGAGTACGACCATCTTCCAGCTGTTTGCCCGCAAAGATCAACCGTTGCTGGTCGGGAGGA 1470863 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| ||||| || | | || || | | | | || | || || || ||| || Sbjct 1470862 ATACCTTCCTTATCCTGGA-TCTTAGTCTTAACATTATCAATAGTATCAGAGCTCTCAAC 1470804 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| | ||||| || || ||||| ||||||||||| |||||| Sbjct 1470803 CTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTTACAAAAATCTGCATC 1470755 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || |||| || || |||||||| ||||| |||||| | || | || || Sbjct 1470736 ACAAGGTGCAAGGTAGACTCCTTTTGAATATTGTAATCGGCCAGAGTACGACCGTCCTCT 1470677 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || ||| | |||| || |||||||| || || || ||||||||||| || Sbjct 1470676 AACTGCTTCCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGGATACCTTCTTTATCCTGG 1470617 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 | |||| || | || | |||| ||| || || ||| || || ||||||| || || Sbjct 1470616 A-TTTTGGTCTTCACGTTGTCTATGGTATCAGAGCTCTCAACCTCTAGAGTAATTGTCTT 1470558 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | ||| || |||||||| ||||| Sbjct 1470557 GCCAGTCAAAGTCTTCACAAAAATCTGCAT 1470528 >seq1860 Length=1182418 Score = 102 bits (112), Expect = 7e-17 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| |||||||| | ||| || ||||| ||||||||||| || ||||| || || || Sbjct 250355 CCTCCCCGGAGCCTGAGCACCAGGTGCAGGGTTGATTCCTTCTGAATATTGTAGTC--TG 250298 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || | | ||| ||||| ||||| || ||| |||||| ||||||||||| || | Sbjct 250297 CCAGTGTACGCTCATCCTCCAACTGTTTACCAGCGAATATCAGCCGTTGCTGGTCAGGTG 250238 Query 45232 GAATGCCTTCTTTATCTTG 45250 |||||||||| || || || Sbjct 250237 GAATGCCTTCCTTGTCCTG 250219 >seq1901 Length=1553398 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || ||||| |||||||| ||||||||||| ||| | ||| | || ||| Sbjct 1019465 ACCAGGTGGAGCGTGGATTCCTTCTGGATATTATAGTCGGCTAAGGTACGACCGTCCTCC 1019406 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || |||||| | |||| | ||||||||||| ||||||||||| || || ||| Sbjct 1019405 AATTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGA 1019346 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || || | || | || ||||| ||| || || || || | || ||| Sbjct 1019345 ATCTTCGTCTTCACATTGTCAATTGTATCGGAGCTCTCAACCTCAAGGGTGATGGTCTTG 1019286 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| || ||||| || ||||| Sbjct 1019285 CCAGTCAAAGTCTTCACAAAGATCTGCAT 1019257 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || |||||||||||||| | || ||| | || || |||||||| Sbjct 1019231 TGCAGTGTAGATTCCTTTTGGATGCTGTAGTCGGCCAACGTACGCCCGTCTTCCAATTGC 1019172 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || |||||| | || | |||||||||||| ||||| ||||| || || || || || || Sbjct 1019171 TTCCCTGCGAAGATAAGTCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGTATCTTG 1019112 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | || || ||| |||||| || ||||| | ||| || ||||| Sbjct 1019111 GTCTTCACATTATCAATTGTATCTGAACTCTCGACCTCAAGAGTGATCGTCTTCCCGGTC 1019052 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 | || || |||||||| |||||| Sbjct 1019051 AAGGTCTTGACAAAAATCTGCATC 1019028 >seq1972 Length=2788724 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| | |||| || || ||||| ||||| || |||||| Sbjct 1774846 CCACCTCGGAGGCGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGGCC 1774905 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| ||||||||||| |||||| | ||||| | ||||||||||| ||| Sbjct 1774906 AGGGTGCGACCATCCTCCAATTGTTTCCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1774965 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || |||| | || || | || | || | ||||| || ||| || Sbjct 1774966 ATCCCCTCCTTGTCCTGAA-TCTTCGTCTTCACGTTATCAATCGTGTCAGAGCTCTCCAC 1775024 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || || || | || || |||||||||||||| Sbjct 1775025 CTCCAGGGTGATGGTCTTCCCTGTCAACGTCTTCACAAAAATTTGCAT 1775072 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| | |||| || || ||||| ||||| || |||||| Sbjct 1799186 CCACCTCGGAGGCGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGGCC 1799127 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| ||||||||||| |||||| | ||||| | ||||||||||| ||| Sbjct 1799126 AGGGTGCGACCATCCTCCAATTGTTTCCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1799067 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || |||| | || || | || | || | ||||| || ||| || Sbjct 1799066 ATCCCCTCCTTGTCCTGAA-TCTTCGTCTTCACGTTATCAATCGTGTCAGAGCTCTCCAC 1799008 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || || || | || || |||||||||||||| Sbjct 1799007 CTCCAGGGTGATGGTCTTCCCTGTCAACGTCTTCACAAAAATTTGCAT 1798960 >seq1762 Length=742324 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | | || |||||| ||||||| || ||||||||||||||||||||||| Sbjct 519200 ATACCTCCCCTCAACCGCAACACAAGATGCAAGGTCGATTCCTTTTGGATATTATAATCA 519141 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || |||| ||| || ||||| | || | | |||||||| || Sbjct 519140 GCCAAAGTACGACCGTCTTCCAGTTGCTTACCTGCAAAAATAAGCCTCTGCTGGTCGGGA 519081 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || ||| || | || | || |||||| || Sbjct 519080 GGGATGCCCTCCTTGTCCTGTATCTTTGTCTTTACATTATCAATAGTATCGGAACTTTCC 519021 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||| || || || | || || |||||||||||||| Sbjct 519020 ACCTCCAATGTTATCGTCTTCCCCGTCAATGTCTTGACAAAAATTTGCAT 518971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451991956420400