Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1990 787 0.0 >seq1990 Length=122890 Score = 787 bits (872), Expect = 0.0 Identities = 779/998 (78%), Gaps = 12/998 (1%) Strand=Plus/Plus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| ||| ||| | ||| ||||||||||||||||| ||||| || ||||| |||||||| Sbjct 53241 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 53300 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 ||||| ||||||||||| | ||| ||||| ||||| | ||||||||||||| ||| Sbjct 53301 CCAAGGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTAATAACACGACCTTGACTGTCA 53360 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | | || |||||||||||||||||||| | |||||| ||||| ||||| | ||| | Sbjct 53361 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAAAGCCATAGTGCTGATACCTAAT 53420 Query 7709 GCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAG 7768 |||||||||||||| || || || ||||| || || | ||||||||| | ||||| ||| Sbjct 53421 GCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAG 53480 Query 7769 TTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG 7828 ||||| || |||||||||||| || | | ||||||||| ||||||||||| |||||| Sbjct 53481 TTGTTAAAGCTAGCGTATTGGAAAATTAATCTACCAAAGTAACCGTGAGCAGCTACGATG 53540 Query 7829 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTG 7888 ||||| || ||||| |||||||| ||||| ||||| ||| |||||| |||||| Sbjct 53541 TTGTAAGTTTCTTCCTCTTGACCAAACTTGTAACCTGCGTTAGCAGACTCATTCTCAGTA 53600 Query 7889 GTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCA 7948 |||||||| | | | || ||||| | ||||||||||| |||||||| ||||| ||| Sbjct 53601 GTTTCACGGATTAAACTTGAAGTTACTAAGGAACCATGCATAGCACTGAATAGAGAGCCA 53660 Query 7949 CCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 8008 || || |||||||| || || ||||||||||| |||||||| ||||||||||| || ||| Sbjct 53661 CCGAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 53720 Query 8009 TGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAA 8068 ||||| |||| |||| ||||||| ||||||||||| || | ||||||| |||||||||| Sbjct 53721 TGGAACACAATCATGAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCGTCAGAGAAG 53780 Query 8069 GAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAG 8128 |||||||| | || |||| | ||| ||||||| || || ||||| ||||| || Sbjct 53781 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAA 53840 Query 8129 TATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCC 8188 ||||| ||| |||||| ||||||||||||| |||||| ||||||||||||||||||| Sbjct 53841 TATGCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCC 53900 Query 8189 ATGTATGCATAG--ATACCGATCAGGAAGTGGAAGATAACGAGT---TGGAAAGGACCAC 8243 ||||| ||| || | ||| | | ||||| |||| ||||| | | | ||||||||| Sbjct 53901 ATGTA-GCA-AGCTACACCAAGTAAGAAGT-GAAG--AACGATTAACTCGTAAGGACCAC 53955 Query 8244 CGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAA 8303 ||||||| ||||| ||||||| ||||| |||||||| || || |||||||| | ||| | Sbjct 53956 CGTTGTAAAGCCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAAACCGA 54015 Query 8304 TAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAAC 8363 |||| ||||| ||| | | |||| |||||||||||||||| || || | || |||| Sbjct 54016 TAGCTGCAGAAGTAGGGATGATAGCAGCAGAGATGATGTTGTTTCCGTAAAGAAGAGAAC 54075 Query 8364 CAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGA 8423 ||| || || |||||||| || ||||| || ||||||||||| || | |||||| | | Sbjct 54076 CAGAAACAGGCTCACGGATACCATCAATATCTACAGGAGGAGCTGCAATGAAAGCAATAA 54135 Query 8424 TGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACA 8482 | || ||| | || |||| | || ||||||||||| | ||||||||||| |||| Sbjct 54136 TAAATACAGA-AGTTGCAGTTAATAGAGTAGGAATCATTAAAACACCGAACCATCCGATG 54194 Query 8483 TACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || || || || | ||| ||| ||||||| ||||| Sbjct 54195 TAAAGGCGGTTTTCAGTGCTGGTAACCCAGTCGCAGAA 54232 Score = 544 bits (602), Expect = 1e-149 Identities = 750/1041 (72%), Gaps = 16/1041 (2%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || || || ||||||| |||||||| || ||||| Sbjct 43452 AGAGCGTTTCCACGTGGTAGAACCTCCTCTGGGAATACAAGATTTTCATGAGGCTGATCT 43511 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | ||||||||| ||||| | ||||||||| | || || || || || || || || Sbjct 43512 TGAGCTGCCATCCAAGCACGAATACCTTCATTTAGAAGAATATTTTTAGTGTAAAAAGTT 43571 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC-TAAG 6441 || || || || || || ||||| | || || || |||||||| |||||||||| ||| Sbjct 43572 TCAAATTCAGGGTCTTCAGCTGCACGAATTTCCTGAGAAACAAAATCATAAGCTCGTAAA 43631 Query 6442 GTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 |||| || | ||||| | ||||| | |||| | ||| | || || ||||| Sbjct 43632 TTTAAA-GCTAAACCAACTACTCCAATAGCACTCATCCATAAACCAGTTACTGGTACAAA 43690 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 |||||||||||||| | |||||| || || || || | ||| ||||| |||||||| Sbjct 43691 TAGCATAAAGAAATGCAACCAACGTTTGTTAGAAAATGCAACACCGAAGATTTGAGACCA 43750 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 |||||| ||||| || ||||| ||||| || || || ||| || || | |||||| Sbjct 43751 GAAACGGTTAGCTGTAACCATAGAATAAGTTTCTTCAGATTGAGTTGGGTTAAACGCACG 43810 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 ||| ||||||| |||||||||||||| |||||||| |||||||| ||||| ||||| Sbjct 43811 GAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTTGCACCATGAAT 43870 Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741 |||||| | | || | || |||| || || || |||||||||||||| ||||| | Sbjct 43871 AGCACATAAAAGAGCAGCTCCCAAGACTCCAGCAACTCCCATCATATGAAATGGGTTTAA 43930 Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 |||||||| ||||| || || | ||| | | ||| ||||| || |||||||||||||| Sbjct 43931 AGTCCAGTTATGGAAACCTTGGAAGAATAAAATGAATCGGAAAATTGCTGCAACACCAAA 43990 Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861 || ||||| ||||||| || || || || || || || | ||| ||||| ||||| Sbjct 43991 ACTAGGTGCAAAAAACCAACCTGATTGACCAAGTGGGTAAATTAAAAATACAGAAACAAA 44050 Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAA----TACCGA-CTAGA 6916 |||||||| || |||||||| || ||||| || || ||||| | ||| || ||| Sbjct 44051 AACAGCAATTGGGCCAGAAAAAGCAATTGCGTTATAAGGACGTAATTGTACGGATCTA-- 44108 Query 6917 CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCC 6976 || | |||||| || || | ||| || ||||| | ||||| ||||| || || || Sbjct 44109 ---GCAAGCTCAAATTGGCGCAACATAAAGCCTATTAAAGCAAAAGCTCCATGAAGAGCA 44165 Query 6977 ACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGA 7036 || |||| |||||| || || | ||| ||| || ||||||||| || ||||||||| Sbjct 44166 ACGAAAGTCCATAGACCTCCTAATTGACACCAACGAGTGAAATCTCCTTGTGCTTCTGGA 44225 Query 7037 CCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTA 7096 ||||||| || | || |||||| | | | | ||||||||| || ||||||||||| Sbjct 44226 CCCCATAATAGTAATAACGAATGTGCTAAACTATTAGCAGGAGTAGAAACAGCAGCAGTT 44285 Query 7097 AGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACG 7156 || |||||||| || || | ||| || ||| | || ||||| ||||| || || Sbjct 44286 AGAAAATTACAACCTTCTAAATAAGAGCTAGCCAATCCATGAGTATACCATGAAGTTACA 44345 Query 7157 AAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGA 7216 |||||||| || || | ||| || || | | | ||||| || || || | ||| Sbjct 44346 AAAGTTGTACCTGTAAACCATCCACCTAAAGAAAAATAAGCGCACGGAAAAAGTAATAGA 44405 Query 7217 CCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTAC-ATCAAA 7275 || |||||||| ||||| || || | || | | ||||||||||| | ||| |||||| Sbjct 44406 CCAGACCAACCTACAAATACAAAACGGTCTCTTCTTAGCCAGTCATCCA-TACTATCAAA 44464 Query 7276 CCACCCCCTTGTTGTTCTTTG 7296 | |||| | |||||||| Sbjct 44465 TAA--ACCTTTTGGTTCTTTG 44483 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 176122 TGGGCAGGGAGGGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCA 176181 ||||| | | ||||||||||| |||||||| ||||||||||||||||||||| | ||| Sbjct 45647 TGGGCCGAGCTGGATTTGAACCAGCGTAGGCAAAGCCAGCGGATTTACAGTCCGTCCCCA 45588 Query 176182 TTAACCACTCGGACACCTACCCTAA 176206 ||||||||||| || | |||| || Sbjct 45587 TTAACCACTCGAGCATCGACCCAAA 45563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622109324645600