Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1794 122 1e-22 seq1886 89.7 6e-13 seq1833 89.7 6e-13 seq1948 84.2 3e-11 >seq1794 Length=856596 Score = 122 bits (134), Expect = 1e-22 Identities = 230/334 (69%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 116665 GTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGG 116723 |||||||| |||||||||||||||| |||| |||| || ||||| |||| || || Sbjct 303990 GTGTAGAGCTTCTCAAACTCTTCACCC-CAGCAATCTGCCAGTCCTGGAGCCTCATTGGG 303932 Query 116724 ACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 116783 ||||| ||||||||| ||| ||| | || || ||||||| |||||||| ||||| Sbjct 303931 GCAGAAAAGAGACCATACGCCATTCTCTTGCACACGTCTCATGAAAAGGTCTGGAATCCA 303872 Query 116784 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 116843 || | |||| ||||| ||| | | ||| || | ||| ||||| | | || Sbjct 303871 CAGACCATAGAATAGATCTCGAGCCCTATTTTCCTCCTTCCCATGATTCTTCCTAAGATC 303812 Query 116844 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC- 116902 || | || | ||||| || |||||||| ||||| || | |||| | ||||| | Sbjct 303811 CAGCCAATCGAATATATCGGCATGCCACGGCTCCAGATAGATAGCGAAAGCGCCCTTCCT 303752 Query 116903 ---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | || ||| |||||| || |||| || || | || ||||| | | ||| || | Sbjct 303751 CTTGCCG-CCACCCTGGTCGACGTACCGAGCTGTGTCATTGAATACCCTCAACATCGGGA 303693 Query 116960 TGATACCATCAGATTGGCCATTTGTCCCCCGAAT 116993 |||| |||| ||| || ||||| || ||||| Sbjct 303692 TGATCCCATTAGAAGTCCCGTTTGTGCCACGAAT 303659 >seq1886 Length=1372085 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || ||||| || || ||||||||||| || || || || ||| Sbjct 694643 GCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAAACGTAAGCCCT 694584 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||| | |||||| | ||| || || || ||||| || || ||||| ||| Sbjct 694583 GGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGCGCAAAAACTCCCTGAAAAGAAAATC 694524 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||| || || ||||| || | | | ||| |||||| Sbjct 694523 CCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAG 694485 >seq1833 Length=1020455 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/291 (67%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||||||||||||||| || || | | || | |||||||||||| | ||| || Sbjct 229283 CTGACGATCAAAGCGACCGGGTCGCAATAAAGCAGCATCAAGGATATCAGCTCTGTTGGT 229342 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 || || || || | | || || | | || || |||||||| || |||| ||| || Sbjct 229343 AGCAGCAATAACTATAACACCTGTGTTGCCCTCAAATCCATCCATTTCTGTCAGGAGCTG 229402 Query 12818 ATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTT 12874 || | ||||||||| |||||||| || || | |||| || | || | |||| Sbjct 229403 GTTCAAGGTTTGTTCTCGTTCATCGTT-GCCACC--ACCAATGCCAGTACCCCTTTGCCG 229459 Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 ||||| || || || ||||| | || || ||||| || ||| || ||| | Sbjct 229460 TCCGACAGCATCGATCTCGTCCACAAAGACAATACAAGGAGCATTCTCTTTGGCTTTCTT 229519 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 |||| || || |||| | ||||| || ||||| |||||||| || || Sbjct 229520 GAAGAGGTCACGTACTCGCGATGCACCAACTCCCACGAACATCTCGACGAA 229570 >seq1948 Length=2296919 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||| || || || |||||||||||||| || || ||| Sbjct 1731518 GCAAAATCGCAGTGTAAGCCCTCATCTCGTGAAATGAGTTCATTCGAAAAAGTAAGCCCT 1731577 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA 127620 |||||||| |||| |||||||| ||| ||||| |||||||| Sbjct 1731578 GGCATGAGCCCCCTCTTCTTCAGCCAAAAAATGGCACAAAA 1731618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613491939008400