Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1886 105 1e-17 seq1794 89.7 8e-13 >seq1886 Length=1372085 Score = 105 bits (116), Expect = 1e-17 Identities = 185/266 (70%), Gaps = 5/266 (2%) Strand=Plus/Minus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| ||||| ||||| ||||||||||| ||||| || || ||||||| |||||||| | Sbjct 694654 ACAGCAGGCATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAA 694595 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | || || ||||| | || | | ||||||||||| |||| ||||||| | || Sbjct 694594 ACGTAAGCCCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGG-CGCAAAAACTCCCT 694536 Query 160035 TAAAA-AAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 |||| || |||||||| ||| || || |||| || ||||| |||| | Sbjct 694535 GAAAAGAAAATCCCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCA 694476 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 |||| | |||| || ||||| ||||||||| | || | ||| || ||| ||| Sbjct 694475 CTGTC---GATCCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCA 694419 Query 160154 ACGGCGTTAAACAATCTGTCCTGCTC 160179 | ||| || || | |||| || ||| Sbjct 694418 ATGGCATTGAAAAGTCTGCTCTTCTC 694393 >seq1794 Length=856596 Score = 89.7 bits (98), Expect = 8e-13 Identities = 194/288 (67%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCC-TCT 205166 ||| |||||| | ||||| || | |||||||| | || |||| ||| | ||| Sbjct 303952 CAGTCCTGGAGCCTCATTGGGGCAGAAAAGAGACCATACGCCATTCTCTTGCACACGTCT 303893 Query 205167 CCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGT 205226 | || || ||||| |||||||| || || || ||||| || |||||| || | || | Sbjct 303892 C-ATGAAAAGGTCTGGAATCCACAGACCATAGAATAGATCTCGAGCCCTATTTTCCTCCT 303834 Query 205227 CTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACC 205286 ||| | ||||| | | ||||||||| | || ||||| ||||||||||| | Sbjct 303833 TCCCATGATTCTTCCTAAGATCCAGCCAATCGAATATATCGGCATGCCACGGCTCCAGAT 303774 Query 205287 ACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGT 205346 | | || | ||||| ||||||| ||||||||||| || |||| | | | Sbjct 303773 AGATAGCGAAAGCGCCCTTCCTCTTGCCGCCACCCTGGTCGACGTACCGAGCTGTGTCAT 303714 Query 205347 TGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 |||| || | || |||||| | | || || | |||||||| |||| Sbjct 303713 TGAATACCCTCAACATCGGGATGATCCCATTAGAAGTCCCGTTTGTGC 303666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795135420514400