Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1917 120 2e-22 seq1943 104 2e-17 seq1814 100 2e-16 seq1762 93.3 3e-14 seq1901 89.7 4e-13 seq1657 84.2 2e-11 seq1639 82.4 5e-11 >seq1917 Length=1730829 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||||||| || || || |||||||| || ||||||||| || || || || || Sbjct 508129 GCCACCTCGCAATCGTAGGACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCTGC 508070 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| ||||||||||| ||| | ||||| | | |||||||| | || Sbjct 508069 CAAGGTGCGACCATCCTCCAATTGTTTGCCGGCGAAAATAAGCCTTTGCTGATCGGGAGG 508010 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| | | || || | | ||| | | | ||||| | ||| |||| Sbjct 508009 AATGCCTTCCTTGTC-TTGAATCTTCGTCTTAACGTTGTCAATCGTGTCAGAGCTCTCCA 507951 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||| || || || || ||||| || || || || ||||| |||||| Sbjct 507950 CCTCCAAGGTGATAGTCTTCCCCGTCAACGTCTTCACAAAGATTTGCATG 507901 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||||||||| |||| ||||| || ||| ||||| ||||| ||||| || Sbjct 508356 CCTCCGCGCAAACGCAAGACCAGGTGCAAGGTCGATTCCTTTTGGATATTGTAATCAGCA 508297 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || ||||| || || |||| || |||||||||||||| | || Sbjct 508296 AGGGTGCGGCCATCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGCTGATCGGGCGGA 508237 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| | |||| || | ||| | | | |||||| | |||||| || Sbjct 508236 ATCCCTTCCTTGTCTTGGA-TTTTCGTCTTCACGTTGTCAATTGTGTCAGAGCTTTCGAC 508178 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || ||||||||||| || || ||||| || ||||| |||||| Sbjct 508177 CTCAAGCGTGATTGTTTTACCGGTCAAGGTTTTAACAAAGATTTGCATG 508129 Score = 107 bits (118), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | |||||| ||||| ||||| ||| || || || || || |||| Sbjct 507676 CATC-CCTCCACGGAGACGCAGCACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAAT 507618 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||||||| ||| |||| ||||| || ||||| |||| || | | ||||| |||| Sbjct 507617 CGGCCAAAGTGCGACCATCTTCCAACTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCCG 507558 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCT 39665 |||| ||| || ||||| || || ||| | | |||| || ||||| | ||| Sbjct 507557 GCGGTATGCCCTCCTTGTCTTGAATCTTGGCTTTGACGTTGTCGATA--GTGTCGGAGCT 507500 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | || || || || ||||| ||||| || || ||||||||||| Sbjct 507499 CTCGACCTCAAGGGTGATGGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 507446 >seq1943 Length=2190071 Score = 104 bits (114), Expect = 2e-17 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| ||| ||||| ||||| |||| ||| || || || || || |||| Sbjct 1470302 CATC-CCTCCTCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAAT 1470244 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||||| || |||| |||| ||| || ||| |||| || | | ||||||||||| Sbjct 1470243 CAGCCAAAGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGATCCG 1470184 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 ||| | ||||||||||| | | | || || | ||| | | | ||||| | ||| Sbjct 1470183 GGGGAATTCCTTCTTTGTC-CTGAATCTTAGTCTTCACGTTGTCGATGGTGTCAGAACTT 1470125 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || ||||| || || || || || || ||||| Sbjct 1470124 TCCACTTCTAATGTGATAGTCTTCCCCGTCAACGTCTTAACAAATATTTGCAT 1470072 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| | || |||| |||| || | ||| || || || || || ||||||||| Sbjct 1470070 CCGCCCCTCAGGCGCAACACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATCGGCC 1470011 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| ||||| || || ||| ||||||| || || ||||| || | || Sbjct 1470010 AGAGTACGCCCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGCTGGTCAGGTGGA 1469951 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || |||| | | | || |||| ||| || || Sbjct 1469950 ATACCTTCTTTGTCTTGAATCTTCGTCTTAACGTTATCAATAGTATCTGAGCTCTCAACT 1469891 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| ||||| || || ||||| | ||||| ||||| || |||||| Sbjct 1469890 TCCAACGTAATCGTCTTCCCCGTCAGCGTTTTGACGAATATTTGCATG 1469843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||| || | ||||| ||| || || || || |||||||||||| Sbjct 1469614 CCACCTCTCAAACGCAAGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCGGCC 1469555 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||| || |||||| | || || | | |||||| || | || Sbjct 1469554 AACGTCCGCCCATCCTCCAACTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGG 1469495 Query 39613 ACGCCTTCTTTGTCGCATAT-TTTTTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || || ||||| ||| || | || | || |||| | || || | ||| || | Sbjct 1469494 ATCCCCTCCTTGTCCTGTATCTTCGTCTTCACATTGTCG--ATGGTATCCGAGCTCTCGA 1469437 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || || || || ||||| | || || || ||||||||||| Sbjct 1469436 CCTCCAAGGTTATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 1469388 >seq1814 Length=924488 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| | || ||||| ||||| || |||||||| || || || ||||| Sbjct 463090 CCTCCCCGCAACCTAAGCACCAAGTGCAAGGTAGACTCTTTTTGGATGTTGTAGTCGGCA 463031 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||| || ||||| ||||||| | | |||||| || | || Sbjct 463030 AGGGTGCGCCCATCCTCCAACTGCTTCCCAGCAAAAATCAGCCTCTGCTGGTCGGGTGGG 462971 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| | | | ||||| | ||| | | | |||||||| ||| || || Sbjct 462970 ATGCCCTCCTTGTC-CTGAATCTTTGTCTTCACGTTGTCAATTGTGTCTGAGCTCTCGAC 462912 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||| || || ||||| | || || ||||||||||||||| Sbjct 462911 CTCGAGGGTAATCGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATG 462863 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| ||||| || | ||| ||| ||||| || || || || ||||| || || Sbjct 463762 CGCAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGCCAATGTACGACCA 463703 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||||||| ||||| | || || | ||||||||| |||| || | || || ||| Sbjct 463702 TCCTCCAATTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTG 463643 Query 39625 TCGCATATTTTT-TGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 || || || | |||| || ||| | ||| || | ||| || || || | |||| Sbjct 463642 TCCTGAATCTTCGTCTTTACATTGTCAAT--TGTATCCGAGCTCTCGACCTCGAGGGTAA 463585 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| || ||||| || || || ||||||||||||||| Sbjct 463584 TTGTCTTCCCCGTCAAGGTCTTCACGAAGATCTGCATG 463547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || ||||| | || ||||| ||||||||| || || ||||| || || || || Sbjct 462863 GCCTCCCCGCAACCTAAGCACCAAGTGCAAAGTGGACTCCTTCTGTATGTTGTAGTCAGC 462804 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | ||| | || ||||| || || || |||| || || | |||||| || | || Sbjct 462803 AAGGGTGCGCCCGTCTTCCAACTGCTTACCTGCAAAGATCAATCTCTGCTGGTCGGGTGG 462744 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||| || ||||| | | | || || | ||| | | |||||||| ||| || | Sbjct 462743 GATGCCCTCCTTGTC-CTGAATCTTCGTCTTCACGTTATCAATTGTGTCTGAGCTCTCGA 462685 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || | ||||| || || ||||| | || || ||||||||||||||| Sbjct 462684 CCTCGAGGGTAATCGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATG 462635 >seq1762 Length=742324 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| |||| || | |||||| || ||| ||||| ||||||||||| ||| Sbjct 519197 CCTCCCCTCAACCGCAACACAAGATGCAAGGTCGATTCCTTTTGGATATTATAATCAGCC 519138 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || |||| ||| || || ||||||| | | |||||| || | || Sbjct 519137 AAAGTACGACCGTCTTCCAGTTGCTTACCTGCAAAAATAAGCCTCTGCTGGTCGGGAGGG 519078 Query 39613 ACGCCTTCTTTGTCGCATAT-TTTTTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||| || ||||| ||| ||| | |||| || || || || || | ||||||| Sbjct 519077 ATGCCCTCCTTGTCCTGTATCTTTGTCTTTACATTATCAATA--GTATCGGAACTTTCCA 519020 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || || || || ||||| || || || || || || ||||| Sbjct 519019 CCTCCAATGTTATCGTCTTCCCCGTCAATGTCTTGACAAAAATTTGCAT 518971 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || |||| || | ||||| || || || || ||||| ||||| || Sbjct 519426 GCCTCCTCTCAGCCGCAACACAAGGTGCAAGGTAGACTCCTTCTGAATATTGTAATCCGC 519367 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | || |||| ||||| || ||||| | || || || ||||||||||| | || Sbjct 519366 GAGAGTTCGCCCATCCTCCAACTGCTTCCCAGCGAAGATCAATCGCTGCTGATCGGGAGG 519307 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| | | ||||| | ||| | | | ||| || | ||| || | Sbjct 519306 AATACCTTCCTTGTC-TTGAATCTTTGTCTTCACGTTGTCGATTGTATCCGAGCTCTCGA 519248 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || ||||| || ||||| || || || || ||||| ||||| Sbjct 519247 CCTCCAACGTGATTGTCTTGCCCGTCAACGTCTTCACAAAGATTTGCAT 519199 >seq1901 Length=1553398 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| ||| || || ||||| ||||| || ||| || || || || || ||||| Sbjct 1018800 GCCACCTCTCAACCGGAGCACCAAGTGCAATGTAGATTCCTTCTGGATGTTGTAGTCGGC 1018741 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || | || |||||||| ||||| | || || | || ||||| || | || Sbjct 1018740 CAACGTACGCCCGTCTTCCAATTGCTTCCCTGCGAAGATAAGTCGTTGCTGGTCAGGCGG 1018681 Query 39612 TACGCCTTCTTTGTCGCATATTTTT-TGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||| || ||||| ||| || | || | || ||| | || || | ||| ||| Sbjct 1018680 GATGCCCTCCTTGTCCTGTATCTTGGTCTTCACATTGTCAATC--GTATCGGAGCTCTCC 1018623 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || || |||||||| ||||| || |||||||||||||| Sbjct 1018622 ACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTCACGAAGATCTGCAT 1018573 >seq1657 Length=432565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/239 (69%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||| || ||| ||||| | ||||| ||||||||||| || ||||| || || || Sbjct 17400 CAATAAT-GCCACCTCGAAGGCGCAGCACCAAATGCAAGGTAGACTCTTTCTGGATGTTG 17342 Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 || || |||| | ||| |||| || | || || ||| | || || | ||||||||| Sbjct 17341 TAGTCAGCCAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 17282 Query 39604 TCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG 39661 |||| || | || || ||||| | || || || | || ||| || ||||| | Sbjct 17281 TCCGGAGGAATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTATCGATA--GTGTCAG 17224 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || | || || || || ||||| | || || ||||||||||||||| Sbjct 17223 AACTCTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 17165 >seq1639 Length=407714 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || ||||| | ||| |||| |||| || || ||| | ||| Sbjct 34834 TCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAA 34775 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 ||||| |||||||| || | || | || || ||||| | | | || || | ||| Sbjct 34774 ATTAATCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTC-CTGAATCTTGGTCTTGACGTT 34716 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | || || | ||| || || ||||| |||||||| || ||||| | |||||| || Sbjct 34715 GTCGATGGTATCCGAGCTCTCGACCTCCAAGGTAATTGTCTTCCCCGTCAGAGTTTTCAC 34656 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 34655 GAAGATCTGCAT 34644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347361175201670