Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1898 149 2e-30 seq1691 131 7e-25 seq1943 123 1e-22 seq1892 123 1e-22 seq1917 95.1 5e-14 seq1740 95.1 5e-14 seq1639 95.1 5e-14 seq1901 91.5 6e-13 seq1762 84.2 9e-11 >seq1898 Length=1509708 Score = 149 bits (164), Expect = 2e-30 Identities = 270/391 (69%), Gaps = 7/391 (2%) Strand=Plus/Plus Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || ||||| ||||| || || || |||||| | || || || || || ||||| | Sbjct 688888 GTGAATTACAAAGGGGAGACGAAGCAGTTTGCTGCGGAGGAGATCTCGTCCATGGTGTTG 688947 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 | ||| |||||||| | || ||| | | |||| | || | |||| || ||| Sbjct 688948 ATTAAGATGAAAGAGATTGCGGAAGCGTTTCTTGGAAAGACTGTGAAGAATGCTGTTATT 689007 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || || |||||||||||| | || |||| || || || |||||||| ||| Sbjct 689008 ACTGTGCCTGCATATTTCAATGATTCGCAGAGGCAGGCGACGAAGGATGCAGGTGCCATT 689067 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 || ||| | |||||||| || || |||||||| ||||| ||||||||| | || ||||| Sbjct 689068 GCGGGTATCAATGTTCTGCGCATCATTAATGAGCCTACGGCAGCTGCTATTGCTTATGG- 689126 Query 451451 CTAGGAAAATCAAAAG--AAACA---GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 || ||| || || | || || | ||| || || ||||| |||| || |||| | Sbjct 689127 CTTGGACAA-GAAGGGTCAATCAGTGGGAGAGAAGAACATTTTGATATTCGACCTTGGGG 689185 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 | |||||| |||| || | | | ||||| || || | ||||| || ||| | | Sbjct 689186 GTGGAACTTTTGATGTGTCGTTGTTGACCATTGAGGAAGGAATCTTTGAGGTGAAGTCCA 689245 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 | ||| ||||||||||| || || || || Sbjct 689246 CGGCTGGAGATACTCATCTTGGTGGCGAGGA 689276 >seq1691 Length=539818 Score = 131 bits (144), Expect = 7e-25 Identities = 259/382 (68%), Gaps = 5/382 (1%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 |||||| |||||||||| ||||| ||||| | | || |||||||| |||||| Sbjct 232104 TTTGCTGCTGAAGAAATCTCATCCATGGTGTTGATCAAGATGAAAGAGGTTGCAGAAGTG 232163 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 | |||| | || | |||| || || || || || || ||||| |||||| | Sbjct 232164 TTCCTTGGAAAGACTGTGAAGAATGCTGTCATCACAGTGCCAGCCTATTTTAATGATTCT 232223 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || |||||||||| || |||||||| ||||||||||||||| |||| || || || Sbjct 232224 CAGAGGCAAGCAACGAAGGATGCAGGTGCTATTGCTGGTTTAAACGTTCAGCGCATCATC 232283 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAA----AGAAACAGA 451473 || || ||||| || ||||| | || ||||| || ||| || | | | || | Sbjct 232284 AACGAGCCTACGGCTGCTGCAATTGCTTATGG-CTTGGATAAGAAGAGTTCATCGACGGG 232342 Query 451474 AGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTC 451533 ||| || || || | | || || |||| || |||||| ||| || | | | Sbjct 232343 AGAGAAGAACATCCTGATTTTCGACCTTGGAGGTGGAACTTTCGATGTATCGTTGTTGAC 232402 Query 451534 AATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGA 451593 ||||| || || | || || || ||||| || || ||||| ||||| || ||||| Sbjct 232403 TATTGAGGAAGGCATCTTCGAGGTGAAGGCCACAGCAGGAGATACACATCTTGGTGGTGA 232462 Query 451594 AGATATTGATAATGCAATTGTG 451615 |||| |||| ||| |||||| Sbjct 232463 AGATTTTGACAATCGGATTGTG 232484 >seq1943 Length=2190071 Score = 123 bits (136), Expect = 1e-22 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || |||||||| ||||| || |||||||| ||||| ||| Sbjct 1470756 ATGCAGATTTTTGTAAAGACTCTGACTGGAAAAACAATCACTCTTGAGGTTGAGAGCTCT 1470815 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | |||| || || || ||||||||||| |||||||| || || Sbjct 1470816 GATACTATTGATAATGTTAAGACTAAGATCCAGGATAAGGAAGGTATTCCTCCCGACCAG 1470875 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || || | || ||||| || |||||||| | ||| | || |||||||| Sbjct 1470876 CAACGGTTGATCTTTGCGGGCAAACAGCTGGAAGATGGTCGTACTCTTGCTGATTATAAC 1470935 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 1470936 ATTCAGAAGGA 1470946 Score = 87.8 bits (96), Expect = 7e-12 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 ||||||| ||||| || |||| || || ||||| || | || || ||| ||||| Sbjct 1470077 AATATTT--GTTAAGACGTTGACGGGGAAGACTATCACATTAGAAGTGGAAAGTTCTGAC 1470134 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | ||| || | || || ||||| || || ||||||||||| || ||||| || Sbjct 1470135 ACCATCGACAACGTGAAGACTAAGATTCAGGACAAAGAAGGAATTCCCCCGGATCAGCAG 1470194 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 | | || || | || || ||||| |||||||| | |||||||| ||||| || ||| Sbjct 1470195 AGACTTATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACTTTGGCTGATTACAACATT 1470254 Query 391233 GATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 | ||||| | || || ||||| || | | |||||||| Sbjct 1470255 CAGAAGGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGAGGA 1470296 >seq1892 Length=1436924 Score = 123 bits (136), Expect = 1e-22 Identities = 269/401 (67%), Gaps = 9/401 (2%) Strand=Plus/Plus Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 ||| | || || || ||| |||||||| ||| |||| || |||| |||||||| || Sbjct 1327161 GTACAGTACAAGGGAGAAGAAAAAACTTTCGCTGCTGAGGAGGTTTCTTCTATGGTGCTC 1327220 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 | || |||||||| | || || || | || || | || | |||| || | Sbjct 1327221 ATCAAGATGAAAGAGATCGCCGAGGCTTACCTAGGATCCACTGTGAAAAATGCCGTGGTG 1327280 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || ||||| |||||||| | || | ||||||||||| ||||| ||| ||| Sbjct 1327281 ACTGTGCCTGCTTACTTCAATGACTCGCAGAGACAAGCAACTAAGGATGCCGGAGTCATT 1327340 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 || ||||| || |||||||| || || ||||| ||||| || ||||| | || || ||| Sbjct 1327341 GCCGGTTTGAACGTTCTTCGTATCATCAATGAGCCTACCGCTGCTGCAATTGCTTACGGA 1327400 Query 451451 CTAGGAAAATCAAAAGAAAC------AGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 | ||| || || | ||| || ||| || ||| | ||| | || ||| | || Sbjct 1327401 -TTGGATAA--GAAGGCAACTTCTGTAGGAGAGAAGAATGTATTAATCTTCGATCTAGGA 1327457 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 || || ||| ||| ||| |||| | || || || || | || || || ||||| Sbjct 1327458 GGCGGTACTTTCGATGTGTCTATACTGACCATCGAGGAAGGTATCTTCGAGGTTAAGGCC 1327517 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||||| || | || || || || |||| || Sbjct 1327518 ACTGCCGGAGATACCCACTTGGGCGGGGAGGACTTTGACAA 1327558 >seq1917 Length=1730829 Score = 95.1 bits (104), Expect = 5e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || || |||||||||||||| ||||| ||||| || || | || ||| | || || Sbjct 507758 AAGATCCAGGATAAGGAAGGAATACCTCCCGATCAGCAGCGGCTCATATTCGCGGGCAAG 507817 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| || || ||| | ||| | ||||||||||| || | ||||| | || | ||| Sbjct 507818 CAACTCGAGGACGGACGCACTCTTGCGGATTATAACATACAGAAGGAATCCACTTTGCAC 507877 Query 391254 TTAGTATTAAGACTGAGAGG 391273 ||||| || |||||||||| Sbjct 507878 TTAGTGTTGCGACTGAGAGG 507897 >seq1740 Length=701575 Score = 95.1 bits (104), Expect = 5e-14 Identities = 114/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 407614 TTCGTAATAATTTAATGGGAAAACGACAAGATTATTGTGCTCGTTCCGTTATTACAGGAG 407673 ||||| ||||| ||||||||||| || | || ||| ||| |||| || || || Sbjct 354620 TTCGTGGAAATTTGATGGGAAAACGTGTGGACTTTTCTGCACGTACCGTGATCACCCCAG 354679 Query 407674 ATCCTGATGTAAATATTGATGAAATAGGAATACCTTTAGCAGTA--GCTAAAAATATTAC 407731 ||||| || |||||||||||||| ||||| |||||| | |||| ||| |||| | || Sbjct 354680 ATCCTAATATAAATATTGATGAATTAGGAGTACCTT--GGAGTATCGCTCTAAATTTAAC 354737 Query 407732 TTTTCCAGAAATTGTAACACCCCAAAATATAGA 407764 | |||||||| |||||| || | ||||| || Sbjct 354738 ATATCCAGAAACTGTAACTCCTTACAATATGGA 354770 >seq1639 Length=407714 Score = 95.1 bits (104), Expect = 5e-14 Identities = 250/380 (66%), Gaps = 9/380 (2%) Strand=Plus/Plus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 || || || ||| | || || || || || |||||||| | ||| ||||| |||| || Sbjct 143595 AAGACCTTCGCTGCAGAGGAGATATCCTCCATGGTTCTGATTAAGATGAAGGAAATTGCC 143654 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 || || | ||||| || ||| |||| || | ||||||||||| || ||||| Sbjct 143655 GAGGCCTACCTCGGTTCGACAATTAAGAATGCCGTGGTCACTGTTCCCGCGTACTTCAAC 143714 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 || | || |||| || || || || || ||| |||||||| || ||||| || || Sbjct 143715 GACTCTCAGAGGCAGGCCACCAAGGACGCCGGAGTGATTGCTGGGTTGAATGTGCTGCGT 143774 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA 451471 || || ||||| || || || || ||| | || || || | ||| || |||| || Sbjct 143775 ATCATCAATGAGCCAACCGCTGCCGCTATTGCGTACGG-TTTGGACAA--GAAAGCGTCA 143831 Query 451472 ------GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCT 451525 | || ||||| | || | || ||| | || || || || |||| || Sbjct 143832 TCCGTGGGGGAGAAAAACGTGTTGATCTTCGATCTCGGAGGCGGTACCTTTGATGTGTCC 143891 Query 451526 GTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTA 451585 | | | || ||||| || | ||||| |||||||| || || |||||||| || Sbjct 143892 CTTTTGACCATCGAAGAAGGTATTTTTGAGGTAAAGGCCACTGCCGGAGATACTCACCTG 143951 Query 451586 GGAGGTGAAGATATTGATAA 451605 ||||| || || | ||||| Sbjct 143952 GGAGGAGAGGACTTCGATAA 143971 Score = 91.5 bits (100), Expect = 6e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| ||||| || || || ||||| | || || || || Sbjct 34644 ATGCAGATCTTCGTGAAAACTCTGACGGGGAAGACAATTACCTTGGAGGTCGAGAGCTCG 34703 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | || || ||||| || ||||| |||||||||||||| || Sbjct 34704 GATACCATCGACAACGTCAAGACCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAG 34763 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || ||||||||| | || || || || || ||||| | || | || || || || Sbjct 34764 CAGCGATTAATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACGCTCGCCGACTACAAC 34823 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| | || |||||||| || || | || || ||| Sbjct 34824 ATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTTAGGGGA 34868 >seq1901 Length=1553398 Score = 91.5 bits (100), Expect = 6e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| ||||||| || || || || ||||| ||||| || Sbjct 1018801 ATGCAGATCTTTGTGAAAACGTTGACTGGCAAGACCATCACCCTTGAGGTTGAGAGCTCC 1018860 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || ||||| || |||||||| |||||||| || || Sbjct 1018861 GATACAATTGACAATGTGAAGACGAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAG 1018920 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || |||| || ||||| || || ||| |||| | ||||| || | Sbjct 1018921 CAGAGGTTGATCTTTGCAGGCAAGCAACTGGAGGACGGACGAACCCTAGCGGACTACAGC 1018980 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | || || | || ||||||||||| | || |||| ||| Sbjct 1018981 ATCCAGAAAGAGTCCACTCTTCACTTAGTCCTTAGGTTGAGGGGA 1019025 >seq1762 Length=742324 Score = 84.2 bits (92), Expect = 9e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||| |||| || || || || || | || || ||| || Sbjct 518971 ATGCAAATTTTTGTCAAGACATTGACGGGGAAGACGATAACATTGGAGGTGGAAAGTTCC 519030 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || ||| || || || ||||| || || ||||| || || Sbjct 519031 GATACTATTGATAATGTAAAGACAAAGATACAGGACAAGGAGGGCATCCCTCCCGACCAG 519090 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | ||||| |||| || ||||| ||||| || | |||||||| ||||||||| Sbjct 519091 CAGAGGCTTATTTTTGCAGGTAAGCAACTGGAAGACGGTCGTACTTTGGCTGATTATAAT 519150 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 519151 ATCCAAAAGGA 519161 Score = 84.2 bits (92), Expect = 9e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||| || || ||||| ||||| || || || || Sbjct 519427 ATGCAAATCTTTGTCAAGACTCTGACCGGAAAGACTATCACTCTGGAGGTCGAGAGCTCG 519486 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || || || |||||||| ||||||||||| || Sbjct 519487 GACACCATTGATAATGTGAAGACTAAGATCCAGGACAAGGAAGGGATTCCTCCTGACCAG 519546 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || || ||||| | ||| | || ||||| || Sbjct 519547 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTTGCTGATTACAAC 519606 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| ||||||| ||| Sbjct 519607 ATCCAGAAGGAGTCAACACTGCAC 519630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975668025354920