Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1794 163 4e-35 seq1979 129 7e-25 seq1833 120 4e-22 seq1980 116 5e-21 seq1945 116 5e-21 seq1886 107 2e-18 seq1871 89.7 6e-13 >seq1794 Length=856596 Score = 163 bits (180), Expect = 4e-35 Identities = 315/456 (69%), Gaps = 14/456 (3%) Strand=Plus/Plus Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 112598 || ||||||||| |||| ||| ||| | ||||||||| ||| |||| | | ||| || Sbjct 304727 AATCTAAACAGAATTATCGATGTAAACTATTACCCCGTCGAGGCTGCGAGAAGATCGAAC 304786 Query 112599 ATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGT 112658 ||| | || ||||| ||||||||||| || ||||| || || || | |||||||| | Sbjct 304787 ATGCGCCATCGTCCTATTGGTCTCGGAGTGCAAGGCCTTGCTGACGCCTTCATTCTGCTT 304846 Query 112659 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATG 112718 || |||||||||| || || || || | |||| |||||||||||| || Sbjct 304847 GGCATGCCATTTGATTCTGAAGAGGCCCAGAAGCTCAACAGAGATATATTTGAGACCATA 304906 Query 112719 TATCACGCCGCTCTTGAGG-CGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAAC 112777 || || ||| | ||||| | | || ||||||| | || ||| || ||||| Sbjct 304907 TACTACCACGCAC-TGAGGACCTCATGCGAATTGGCAGCAGAGGAGGGTGTCTACGAAAC 304965 Query 112778 CTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGA 112836 | ||| || | ||| || |||||| | |||||| ||||||||||| | || Sbjct 304966 GTATGATGGATGTCC-TATTAGCAAGGGACTCCTTCAACCGGATATGTGGGATGTCAAGC 305024 Query 112837 CCAAGCTTCA--CTACGACTGGGACGCTCTCAAGGAACGCATCAAGG---AGAAGGGTCT 112891 || | ||| | |||||||| ||| | | |||||| | | |||| ||| | Sbjct 305025 CC--TCCTCAAGATGGGACTGGGATGCTTT---GAGACGCATGATTGCTAAGAACGGTGT 305079 Query 112892 TCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 112951 |||||| |||| | |||| || ||||| ||||| || ||| ||||||||||| || Sbjct 305080 GCGTAACTCTCTTCTTTTGGCTCCCATGCCCACAGCATCAACCAGTCAAATCTTGGGCAA 305139 Query 112952 TAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 ||||||||||| || || ||||| |||| ||||| Sbjct 305140 CAATGAATGCTTCGAGCCTTACACATCGAATATCTA 305175 >seq1979 Length=3181686 Score = 129 bits (142), Expect = 7e-25 Identities = 252/366 (69%), Gaps = 10/366 (3%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||||||||||||||| | ||||||||||| || || || ||||| || || || | Sbjct 1436043 AAACCATCCATCTCTGTGAGCAGCTGGTTAATGGTCTGCTCTCGTTCGTCGTTTCCT--C 1435986 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | ||| || |||| | ||| |||| ||||||||||||||||| ||||| ||||||| Sbjct 1435985 CTCCCATACCGGCACCTCTCTGCCTTCCAACGGCATCAATCTCATCGATGAAAACGATGC 1435926 Query 16093 ATGGTTGATTTTCGC--GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | || | ||||| || ||| || | ||| || ||||| || |||||||| Sbjct 1435925 AAGG--GGCCTTCGCTTTGGCCTTTTCGAACAAATCACGAACACGGGAAGCTCCCACACC 1435868 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 |||||| | || || || | | ||| | ||| || ||| |||||| || || || Sbjct 1435867 AACAAAGAGTTCGACGAATTCGGAGGCTGCGCATGAGAAGAATGGGACACCAGCCTCTCC 1435808 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 | || |||| ||||| | |||||| || || || || || |||| | | || | Sbjct 1435807 GGAAACAGCTCTTGCGAGCAAAGTCTTTCCTGTTCCAGGTGGGCCGACGAGCA-GACATC 1435749 Query 16271 TCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 | | |||||||| || || || |||| | || || | ||| | ||||| |||| Sbjct 1435748 CCTTGGGAATCTTAGCACCGAGGGCAGTGTATTTGTCGGGGTTCTTCAAGAAATCGACAA 1435689 Query 16330 TCTCTT 16335 ||||| Sbjct 1435688 CCTCTT 1435683 >seq1833 Length=1020455 Score = 120 bits (132), Expect = 4e-22 Identities = 203/291 (70%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||||||||||||||| || || | | || |||||||||||||| | | || || Sbjct 229283 CTGACGATCAAAGCGACCGGGTCGCAATAAAGCAGCATCAAGGATATCAGCTCTGTTGGT 229342 Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTG 16000 || || || || | || |||||| | | ||||| |||||||| ||||||| ||||| Sbjct 229343 AGCAGCAATAACTATAACACCTGTGTTGCCCTCAAATCCATCCATTTCTGTCAGGAGCTG 229402 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTT 16057 ||| | |||||||| |||||||| || || | |||| |||| || | |||| Sbjct 229403 GTTCAAGGTTTGTTCTCGTTCATCGTT-GCCACC--ACCAATGCCAGTACCCCTTTGCCG 229459 Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC 16117 ||| || ||||| ||||| || | ||||| || || || ||| || || | Sbjct 229460 TCCGACAGCATCGATCTCGTCCACAAAGACAATACAAGGAGCATTCTCTTTGGCTTTCTT 229519 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 ||||| || ||||| ||| || || || || || |||||||| || || Sbjct 229520 GAAGAGGTCACGTACTCGCGATGCACCAACTCCCACGAACATCTCGACGAA 229570 >seq1980 Length=3210214 Score = 116 bits (128), Expect = 5e-21 Identities = 158/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||||||||||||||| || || || | || ||||||| |||||| | | ||| || Sbjct 923058 CTGACGATCAAAGCGACCGGGCCGCAGCAAAGCAGCATCAAGTATATCAGCCCTATTGGT 923117 Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTG 16000 ||| || || |||| || |||||| | ||||| |||||||| ||||||| ||||| Sbjct 923118 TGCAGCAATTACAATAACACCTGTATTACCCTCAAATCCATCCATTTCTGTCAGGAGCTG 923177 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTT 16057 ||| | |||||||| || || ||||| | |||| |||| || | |||| Sbjct 923178 GTTCAAGGTTTGTTCTCGCTCGTCATT---TCCACCACCAATGCCAGTACCCCTTTGCCG 923234 Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 ||| || ||||| ||||| || | ||||| ||||| || Sbjct 923235 TCCGACAGCATCTATCTCGTCCACAAAGACAATGCAAGG 923273 >seq1945 Length=2262169 Score = 116 bits (128), Expect = 5e-21 Identities = 247/364 (68%), Gaps = 6/364 (2%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||| ||||||||||| | || |||||||| || || ||||| |||||||| || | Sbjct 521460 AAACCGTCCATCTCTGTAAGCAGTTGGTTAATGGTCTGCTCCCGCTCATCATTTCCT--C 521403 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | ||| || || | | ||| | |||||||||||||||||||| ||||||||||||| Sbjct 521402 CTCCCATACCGGCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGATGAAGACGATGC 521343 Query 16093 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 | || || | || || || | || || ||||| || |||||||| | Sbjct 521342 AAGGAGCCTTAGCCTTGGCCTTCTCGAACAAGTCGCGGACACGAGAAGCTCCCACACCGA 521283 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 16212 | || | || || || | || ||| | ||| || ||| || ||| | || || | Sbjct 521282 CGAAGAGTTCAACGAATTCTGAGGCTGCGCATGAGAAGAAAGGAACACCGGCCTCTCCGG 521223 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 | || | |||||||||||||| || || || || ||| |||| | || | | Sbjct 521222 ACACAGCCCTTGCGAGAAGAGTCTTTCCTGTTCCGGGAGGACCGACGAGCA-AACATCCC 521164 Query 16273 GT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 | ||||||||||| || | |||| | ||||| | ||| ||||||||||||| Sbjct 521163 TTGGGAATCTTGGCACCTAGGGCTGTGTATTTGTCAGGGTTCTTCAGAAAATCCACAACT 521104 Query 16332 TCTT 16335 |||| Sbjct 521103 TCTT 521100 >seq1886 Length=1372085 Score = 107 bits (118), Expect = 2e-18 Identities = 191/274 (70%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 102059 GTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAA-GCCATCCAAACAGTTCCAT 102117 ||| ||||| ||| |||||||||| |||| ||| || ||||| | || | || | Sbjct 694374 GTACATTAAAGATCAAGCTGAGAAGA-GCAGACTTTTCAATGCCATTGAGACCATACCTT 694432 Query 102118 GTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTG 102177 | || | ||| || || |||||| | || ||| | || || | | | | |||| Sbjct 694433 GCGTTGCTAGGAAGGCTGACTGGGCTCTAAAATGGATCGA--CAGTGCTGGGAGC-TTTG 694489 Query 102178 CTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG 102237 | ||| || || | || || || || || ||||| || ||||| || || || |||| Sbjct 694490 CAGAGAGAATCCTGGCTTTCGCCTGCGTCGAGGGGATTTTCTTTTCAGGGAGTTTTTGCG 694549 Query 102238 CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTA 102297 | || | ||||||||||||| ||||||| |||||||| || || |||||||| || | Sbjct 694550 CCATCTTTTGGCTCAAGAAGAGAGGTCTTATGCCAGGGCTTACGTTTTCCAACGAACTCA 694609 Query 102298 TCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| || || ||||| || ||| || ||||| Sbjct 694610 TCTCACGAGATGAGGGCCTGCACTGCGATTTTGC 694643 >seq1871 Length=1245209 Score = 89.7 bits (98), Expect = 6e-13 Identities = 316/485 (65%), Gaps = 18/485 (4%) Strand=Plus/Plus Query 15897 CCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACA 15956 || || ||||| | || | || || |||||| | | || || || || ||||||| Sbjct 820232 CCAGGACGAAGCAAGGCAGCGTCGAGAATATCAGCCCTGTTGGTGGCAGCAATGACAATC 820291 Query 15957 ATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTT 16014 | ||| |||||| || | ||||| |||||||| ||||| | ||| || | || || | Sbjct 820292 ACACCAGTGTTTCCTT--CGAAACCGTCCATCTCCGTCAACAACTGATTCAACGTCTGCT 820349 Query 16015 CCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAAT 16072 | || |||||||| || | | | | |||| | | || |||| ||||||||||| Sbjct 820350 CACGCTCATCATTGCCT--CCTCCAATTCCAGTTCCTCTCTGTCTTCCAACGGCATCAAT 820407 Query 16073 CTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCC 16128 |||||| | || || ||||| || || |||||| | ||| || || |||| Sbjct 820408 CTCATCCACAAACACAATGCAGGGAGCATTCTCTTTCGC---CTTCTTGAACAAG-TCCC 820463 Query 16129 GTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-G 16187 ||||| || ||||| || || ||||| ||||| || | | | | | || | | Sbjct 820464 TCACACGGGAAGCTCCCACTCCCACGAACATTTCCACGAACTCAGACCCAG-AGATGGAG 820522 Query 16188 ATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCT 16247 | ||| || || || ||| || || ||||| || | |||||||| || ||||| Sbjct 820523 AAGAATGGTACTCCAGCTTCCCCAGCGATGGCCTTCGCCAATAGAGTCTTTCCGGTACCG 820582 Query 16248 GGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCA 16307 || || | || | | || ||| || || ||||| | | | |||||||| Sbjct 820583 GGTGGTCCAACCAGCAACACTCCCTTTGGGATTTTAGCGCCCACTGCTGTGAATCTCTCA 820642 Query 16308 GGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCA 16367 || |||| | || ||||||| ||| || || | ||||| |||| | ||| || Sbjct 820643 GGCCGCTTCAAGAACTCCACAACCTCCATGAAGTCTTGCTTGGCCTCGTCTACTCCCGCA 820702 Query 16368 ACATC 16372 ||||| Sbjct 820703 ACATC 820707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620726959032800