Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1886 143 3e-29 seq1979 116 4e-21 seq1945 116 4e-21 seq1833 114 2e-20 seq1794 111 2e-19 seq1811 95.1 1e-14 seq1980 87.8 2e-12 >seq1886 Length=1372085 Score = 143 bits (158), Expect = 3e-29 Identities = 188/258 (73%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || |||||||| || || || ||| || ||||| || ||| Sbjct 694631 TGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAAACGTAAGCCCTGGCATAAGACCT 694572 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 || ||||| |||||||||||||| |||||||| || |||||||| || ||||| || ||| Sbjct 694571 CTCTTCTTGAGCCAAAAGATGGCGCAAAAACTCCCTGAAAAGAAAATCCCCTCGACGCAG 694512 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 |||||||| | | | ||| ||||| | || |||||| ||| || ||||||||| Sbjct 694511 GCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCACTGTCGATCCATTTTAGAGCCCAG 694452 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGT-TGCTTCTTTTC 119746 | ||||| | | | ||| || | || | ||||| | ||||||| ||| |||| || Sbjct 694451 TCAGCCTTCCTAGCAACGCAAGGTATGGTCTCAATGGCATTGAAAAGTCTGC-TCTTCTC 694393 Query 119747 AGCACCATCCTTAATATA 119764 ||| ||| ||||| || Sbjct 694392 AGCTTGATCTTTAATGTA 694375 >seq1979 Length=3181686 Score = 116 bits (128), Expect = 4e-21 Identities = 257/381 (67%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 |||||| ||||| |||||||| |||||||| || ||||| || || || ||||| Sbjct 1436044 GAAACCATCCATCTCTGTGAGCAGCTGGTTAATGGTCTGCTCTCGTTCGTCGTTTCCT-- 1435987 Query 11652 CATACCA--CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATA 11709 | | ||| || || | || | | || || || ||||||||||||||||| ||||| Sbjct 1435986 CCTCCCATACCGGCACCTCTCTGCCTTCCAACGGCATCAATCTCATCGATGAAAACGATG 1435927 Query 11710 CACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 || || || || |||| |||||| | ||||| ||||| ||||| ||||| Sbjct 1435926 CAAGGGGCCTTCGCTTTGGCCTTTTCGAACAAATCACGAACACGGGAAGCTCCCACACCA 1435867 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828 || || | || ||||| | | ||| | || ||| | ||| || ||| || ||| || Sbjct 1435866 ACAAAGAGTTCGACGAATTCGGAGGCTGCGCA-TGAGAAGAATGGGACACCAGCCTCTCC 1435808 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 | | |||| ||||| | |||||| || || ||||||| || |||| || || Sbjct 1435807 GGAAACAGCTCTTGCGAGCAAAGTCTTTCCTGTTCCAGGTGGGCCGACGAGCAGACATCC 1435748 Query 11889 ACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAAT 11948 ||| ||||| ||||| || ||| || || ||||| | ||| || |||| Sbjct 1435747 CTTGGGAATCTTAGCACCGAGGGCAGTGTATTTGTCGGGGTTCTTCAAGAAATCGACAAC 1435688 Query 11949 CTCCTCAAGTTCCTCCTTGGC 11969 ||| | |||||| |||||| Sbjct 1435687 CTCTTGTAGTTCCAACTTGGC 1435667 >seq1945 Length=2262169 Score = 116 bits (128), Expect = 4e-21 Identities = 257/381 (67%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 |||||||||||| ||||| || || ||||| || ||||| || |||||||| || Sbjct 521461 GAAACCGTCCATCTCTGTAAGCAGTTGGTTAATGGTCTGCTCCCGCTCATCATTTCCT-- 521404 Query 11652 CATACCA--CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATA 11709 | | ||| || || | || | |||| || || ||||||||||||||||| ||||| Sbjct 521403 CCTCCCATACCGGCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGATGAAGACGATG 521344 Query 11710 CACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 || || || || |||| ||||| | || || ||||| ||||| ||||| Sbjct 521343 CAAGGAGCCTTAGCCTTGGCCTTCTCGAACAAGTCGCGGACACGAGAAGCTCCCACACCG 521284 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828 ||||| | |||||||| | || ||| | || ||| | ||| |||||| | ||| || Sbjct 521283 ACGAAGAGTTCAACGAATTCTGAGGCTGCGCA-TGAGAAGAAAGGAACACCGGCCTCTCC 521225 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 | | || | ||||| |||||||| || || || || | ||| |||| | || Sbjct 521224 GGACACAGCCCTTGCGAGAAGAGTCTTTCCTGTTCCGGGAGGACCGACGAGCAAACATCC 521165 Query 11889 ACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAAT 11948 ||| ||||||||||| | ||| ||||| ||||| || || ||||||| Sbjct 521164 CTTGGGAATCTTGGCACCTAGGGCTGTGTATTTGTCAGGGTTCTTCAGAAAATCCACAAC 521105 Query 11949 CTCCTCAAGTTCCTCCTTGGC 11969 || | ||| || |||||| Sbjct 521104 TTCTTGAAGCTCAAGCTTGGC 521084 >seq1833 Length=1020455 Score = 114 bits (126), Expect = 2e-20 Identities = 205/297 (69%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 || || |||||| || ||||| || || | || |||| ||||||| ||||| | | ||| Sbjct 229280 AACCTGACGATCAAAGCGACCGGGTCGCAATAAAGCAGCATCAAGGATATCAGCTCTGTT 229339 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAG 11615 ||||| ||||| |||| || || || | || || || ||||||||||| || || Sbjct 229340 GGTAGCAGCAATAACTATAACACCTGTGTTGCCCTCAAATCCATCCATTTCTGTCAGGAG 229399 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC-GAACGC-- 11670 |||||| | || ||||| || ||||||||| |||||| |||| | || | Sbjct 229400 CTGGTTCAAGGTTTGTTCTCGTTCATCGTTG------CCACCACCAATGCCAGTACCCCT 229453 Query 11671 -TTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 | | |||||||| || ||||| || | || || ||||| || || | || Sbjct 229454 TTGCCGTCCGACAGCATCGATCTCGTCCACAAAGACAATACAAGGAGCATTCTCTTTGGC 229513 Query 11730 CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 | | ||| || |||||||| ||| || ||||| || ||||||||||| ||||| Sbjct 229514 TTTCTTGAAGAGGTCACGTACTCGCGATGCACCAACTCCCACGAACATCTCGACGAA 229570 >seq1794 Length=856596 Score = 111 bits (122), Expect = 2e-19 Identities = 305/453 (67%), Gaps = 32/453 (7%) Strand=Plus/Minus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 |||| | |||||| || | ||||| || ||||| || ||||||||||| | |||||| Sbjct 305184 CGTCTGCTGTAGATATTCGATGTGTAAGGCTCGAAGCATTCATTGTTGCCCAAGATTTGA 305125 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTT 109863 || || ||||||||||||||||||| |||||| ||| || | ||| ||| || Sbjct 305124 CTGGTTGATGCTGTGGGCATGGGAGCCAAAAGAAGAGAGTTACGCACACCGTTC----TT 305069 Query 109864 ACCCGCTCACGCATTGCGTC-CCAATCATAAC-GACC--ACTAAATTTAGTCTCACCATC 109919 | | ||| |||||| | || ||| | | || || | | || |||| Sbjct 305068 A-GCAATCA-----TGCGTCTCAAAGCATCCCAGTCCCATCTTGAGGAGGGCTTGACATC 305015 Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGA 109979 ||||||||| |||||||| | |||| | |||| | || | | | ||||| || Sbjct 305014 CCACATATCCGGTTGAAGGAGTCCCTTGCTAATAGGACATCCATCATACGTTTCGTA-GA 304956 Query 109980 C-CCCTCAACCTCGGCCAACTCGGATGAAG-CCTCTAGTGCCGCATGATACATAGTCTCA 110037 | ||||| | | ||||| ||| |||| | |||| ||||| | || || |||||| Sbjct 304955 CACCCTCCTCTGCTGCCAATTCGCATGAGGTCCTC-AGTGCGTGGTAGTATATGGTCTCA 304897 Query 110038 AAAATA-------TGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACA 110090 || ||| ||||| ||| || ||| ||||||| | || || || | ||| Sbjct 304896 AATATATCTCTGTTGAGC-TTC-TG-GGC----CTCTTCAGAATCAAATGGCATGCCAAG 304844 Query 110091 AAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTT 110150 ||||| || | || || || || || || ||||||||||| || ||||| |||||| Sbjct 304843 CAGAATGAAGGCGTCAGCAAGGCCTTGCACTCCGAGACCAATAGGACGATGGCGCATGTT 304784 Query 110151 AGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTT 110183 || | || |||| || ||||||||| |||| Sbjct 304783 CGATCTTCTCGCAGCCTCGACGGGGTAATAGTT 304751 >seq1811 Length=1023968 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| |||||||| || || | ||| |||||||||||| | | ||| || || Sbjct 530353 CGATCGAATCGACCTGGTCGCAGCAAAGCTGAATCAAGAATATCAGCTCTGTTGGTGGCA 530294 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || || || | | || || || ||||||||||||||||||||||| Sbjct 530293 GCAACAACAATAACACCTGTGTTACCCTCAAATCCATCCATTTCTGTGAGAAGCTGGTTC 530234 Query 11623 ATCGTCTGTTCACGCTCATC 11642 | ||||| || |||||||| Sbjct 530233 AAGGTCTGCTCTCGCTCATC 530214 >seq1980 Length=3210214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/297 (67%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 || || |||||| || ||||| || || || | |||| ||||||| ||||| | | || Sbjct 923055 AACCTGACGATCAAAGCGACCGGGCCGCAGCAAAGCAGCATCAAGTATATCAGCCCTATT 923114 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAG 11615 || || ||||| || | || || || | | || || || ||||||||||| || || Sbjct 923115 GGTTGCAGCAATTACAATAACACCTGTATTACCCTCAAATCCATCCATTTCTGTCAGGAG 923174 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC-GAACGC-- 11670 |||||| | || ||||| ||||| || || |||||| |||| | || | Sbjct 923175 CTGGTTCAAGGTTTGTTCTCGCTCGTCATT------TCCACCACCAATGCCAGTACCCCT 923228 Query 11671 -TTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 | | |||||||| || ||||| || | || || || || || || | || Sbjct 923229 TTGCCGTCCGACAGCATCTATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCTTTGGC 923288 Query 11730 CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 | | ||| || ||||| || || || ||||| || ||||||||||||||||| Sbjct 923289 TTTCTTGAAGAGGTCACGCACTCGTGATGCACCAACTCCCACGAACATCTCAACGAA 923345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588961349222000