Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1794 140 4e-28 seq1979 123 3e-23 seq1945 122 1e-22 seq1980 120 4e-22 seq1833 116 4e-21 seq1886 100 3e-16 >seq1794 Length=856596 Score = 140 bits (154), Expect = 4e-28 Identities = 310/457 (68%), Gaps = 16/457 (4%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 ||||| |||| ||||| || || ||||||||||| || ||||||||||| ||| || Sbjct 305175 TAGATATTCGATGTGTAAGGCTCGAAGCATTCATTGTTGCCCAAGATTTGACTGGTTGAT 305116 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC---CTTTTCCTTGATGCGT 106051 ||||| ||||| || |||| | |||| |||||| | ||| ||| | | |||||| Sbjct 305115 GCTGTGGGCATGGGAGCCAAAAGAAGAGAGTTACGCACACCGTTCTTAGCAATCATGCGT 305056 Query 106052 TCCTTGAGAACATCCCAGTCGTA-GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG 106110 | | | |||||||||| | ||||| || || | | ||||||||||| ||| Sbjct 305055 ---CTCAAAGCATCCCAGTCCCATCTTGAGGAGGGCTTGA-CATCCCACATATCCGGTTG 305000 Query 106111 AAGCA-CCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169 ||| | |||||| | | ||| | || ||| | || || ||| ||| | || | | Sbjct 304999 AAGGAGTCCCTTGCTA-ATAGGACATCCATCATACGTTTCGTAGACACCCTCCTCTGCTG 304941 Query 106170 CCAATTCACAGCTCGCCTCCAGGGATGCGTG---ATACATGGTTTCAAAGATACGAGCAT 106226 ||||||| || | | ||| |||||| || ||||| ||||| ||| | Sbjct 304940 CCAATTCGCATGAGGTCCTCAG---TGCGTGGTAGTATATGGTCTCAAATATATCTCTGT 304884 Query 106227 TCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGA 106286 | | || || ||| || || |||||||||| || || ||| || | || || | Sbjct 304883 TGAGCTTCTGGGCCTCTTCAGAATCAAATGGCATGCCAAGCAGAATGAAGGCGTCAGCAA 304824 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 106346 | ||||| || || | ||||||||| | || ||||| || || ||| ||||| ||| | Sbjct 304823 GGCCTTGCACTCCGAGACCAATAGGACGATGGCGCATGTTCGATCTTCTCGCAGCCTCGA 304764 Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATT 106383 |||| ||| | ||| || || | || ||||||||| Sbjct 304763 CGGGGTAATAGTTTACATCGATAATTCTGTTTAGATT 304727 Score = 109 bits (120), Expect = 6e-19 Identities = 318/480 (66%), Gaps = 11/480 (2%) Strand=Plus/Minus Query 106697 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGG 106755 |||||||| |||||||| |||||| | || || | || ||||| |||| | || Sbjct 303990 GTGTAGAGCTTCTCAAACTCTTCACCC-CAGCAATCTGCCAGTCCTGGAGCCTCATTGGG 303932 Query 106756 ACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 106815 ||||||||||||||| ||| ||| | || || |||||||||||||||||||||| Sbjct 303931 GCAGAAAAGAGACCATACGCCATTCTCTTGCACACGTCTCATGAAAAGGTCTGGAATCCA 303872 Query 106816 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CT 106874 ||| | || ||||||| | || | || || | || || || || ||| | Sbjct 303871 CAGACCATAGAATAGATCTCGAGCCCTATTTTCCTCCTTCCCATGATT-CTTCCTAAGAT 303813 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT-- 106932 | || | || | ||||| || ||||| ||||| ||||||| |||| || ||||| Sbjct 303812 CCAGCCAATCGAATATATCGGCATGCCACGGCTCCAGATAGATAGCGAAAGCGCCCTTCC 303753 Query 106933 --TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 | | || ||| | || | || || || |||||| | || ||||| | | ||| || Sbjct 303752 TCTTGCCG-CCACCCTGGTCGACGTACCGAGCTGTGTCATTGAATACCCTCAACATCGGG 303694 Query 106991 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATC 107049 || || |||| || || ||||| || ||||| || | | | || | | || Sbjct 303693 ATGATCCCATTAGAAGTCCCGTTTGTGCCACGAAT-GTAGCTGCCAGTAGCACGGATATT 303635 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 ||| | || ||||| || ||||| |||| || ||||||||| | ||||| Sbjct 303634 ATGAACTGACAAACCAATTCCACCAGCTGACTTGCTAATAACAGCACACTCCTTCAGAGT 303575 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 | |||||||| | || ||| | ||| || | ||||||||||||| || ||| Sbjct 303574 GTCGTAGATACCCTCAATGCTGTCGCCTTTGGTGCATACAAGGAAGCAACTGCTCAGCTG 303515 >seq1979 Length=3181686 Score = 123 bits (136), Expect = 3e-23 Identities = 251/366 (69%), Gaps = 10/366 (3%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||||||||| | || |||||||| || || || ||||| || || || | Sbjct 1436043 AAACCATCCATCTCTGTGAGCAGCTGGTTAATGGTCTGCTCTCGTTCGTCGTTTCCT--C 1435986 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | ||| || |||| | ||| |||| ||||||||||||||||| ||||| || || | Sbjct 1435985 CTCCCATACCGGCACCTCTCTGCCTTCCAACGGCATCAATCTCATCGATGAAAACGATGC 1435926 Query 9400 ATGGTTGATTTTCGCG--GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 | || | ||||| ||| |||| || | ||| ||||| | || |||||||| Sbjct 1435925 AAGG--GGCCTTCGCTTTGGCCTTTTCGAACAAATCACGAACACGGGAAGCTCCCACACC 1435868 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 |||||| | || || || | | ||| | ||| || ||| |||||| || || || Sbjct 1435867 AACAAAGAGTTCGACGAATTCGGAGGCTGCGCATGAGAAGAATGGGACACCAGCCTCTCC 1435808 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 | || |||| ||||| | |||||| || || || || || |||| | | || | Sbjct 1435807 GGAAACAGCTCTTGCGAGCAAAGTCTTTCCTGTTCCAGGTGGGCCGACGAGCA-GACATC 1435749 Query 9578 CCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 || | |||||||| || || || |||| | || || | ||| | ||||| |||| Sbjct 1435748 CCTTGGGAATCTTAGCACCGAGGGCAGTGTATTTGTCGGGGTTCTTCAAGAAATCGACAA 1435689 Query 9637 TCTCTT 9642 ||||| Sbjct 1435688 CCTCTT 1435683 >seq1945 Length=2262169 Score = 122 bits (134), Expect = 1e-22 Identities = 248/364 (68%), Gaps = 6/364 (2%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||| ||||||||||| | ||||||||||| || || ||||| |||||||| || | Sbjct 521460 AAACCGTCCATCTCTGTAAGCAGTTGGTTAATGGTCTGCTCCCGCTCATCATTTCCT--C 521403 Query 9342 ATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | || ||| || | | ||| | |||||||||||||||||||| |||||||| || | Sbjct 521402 CTCCCATACCGGCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGATGAAGACGATGC 521343 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || || | ||| | || || | ||||| || | || |||||||| | Sbjct 521342 AAGGAGCCTTAGCCTTGGCCTTCTCGAACAAGTCGCGGACACGAGAAGCTCCCACACCGA 521283 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 | || | || || || | || ||| | ||| || ||| || ||| | || || | Sbjct 521282 CGAAGAGTTCAACGAATTCTGAGGCTGCGCATGAGAAGAAAGGAACACCGGCCTCTCCGG 521223 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 | || | |||||||||||||| || || || || ||| |||| | || ||| Sbjct 521222 ACACAGCCCTTGCGAGAAGAGTCTTTCCTGTTCCGGGAGGACCGACGAGCA-AACATCCC 521164 Query 9580 GT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638 | ||||||||||| || | |||| | ||||| | ||| ||||||||||||| Sbjct 521163 TTGGGAATCTTGGCACCTAGGGCTGTGTATTTGTCAGGGTTCTTCAGAAAATCCACAACT 521104 Query 9639 TCTT 9642 |||| Sbjct 521103 TCTT 521100 >seq1980 Length=3210214 Score = 120 bits (132), Expect = 4e-22 Identities = 202/291 (69%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 9188 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9247 || ||||||||||||||| || || || | || ||||||| |||||| | | ||| || Sbjct 923058 CTGACGATCAAAGCGACCGGGCCGCAGCAAAGCAGCATCAAGTATATCAGCCCTATTGGT 923117 Query 9248 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9307 || || || |||| || |||||| | | ||||| |||||||| ||||||| || || Sbjct 923118 TGCAGCAATTACAATAACACCTGTATTACCCTCAAATCCATCCATTTCTGTCAGGAGCTG 923177 Query 9308 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTT 9364 ||| | |||||||| || || ||||| | |||| |||| || | |||| Sbjct 923178 GTTCAAGGTTTGTTCTCGCTCGTCATT---TCCACCACCAATGCCAGTACCCCTTTGCCG 923234 Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 9424 ||| || ||||| ||||| || | |||||||| || || ||| || ||| | | Sbjct 923235 TCCGACAGCATCTATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCTTTGGCTTTCTT 923294 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||||| || || || | | || || || || || |||||||| || || Sbjct 923295 GAAGAGGTCACGCACTCGTGATGCACCAACTCCCACGAACATCTCAACGAA 923345 >seq1833 Length=1020455 Score = 116 bits (128), Expect = 4e-21 Identities = 202/291 (69%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 9188 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9247 || ||||||||||||||| || || | | || |||||||||||||| | | || || Sbjct 229283 CTGACGATCAAAGCGACCGGGTCGCAATAAAGCAGCATCAAGGATATCAGCTCTGTTGGT 229342 Query 9248 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9307 || || || || | || |||||| | ||||| |||||||| ||||||| || || Sbjct 229343 AGCAGCAATAACTATAACACCTGTGTTGCCCTCAAATCCATCCATTTCTGTCAGGAGCTG 229402 Query 9308 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTT 9364 ||| | |||||||| |||||||| || || | |||| |||| || | |||| Sbjct 229403 GTTCAAGGTTTGTTCTCGTTCATCGTT-GCCACC--ACCAATGCCAGTACCCCTTTGCCG 229459 Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 9424 ||| || ||||| ||||| || | ||||||||||| || ||| || ||| | | Sbjct 229460 TCCGACAGCATCGATCTCGTCCACAAAGACAATACAAGGAGCATTCTCTTTGGCTTTCTT 229519 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||||| || || || | || || || || || |||||||| || || Sbjct 229520 GAAGAGGTCACGTACTCGCGATGCACCAACTCCCACGAACATCTCGACGAA 229570 >seq1886 Length=1372085 Score = 100 bits (110), Expect = 3e-16 Identities = 189/274 (69%), Gaps = 7/274 (3%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| || ||||||||||| || || ||||| || || || || ||| Sbjct 694643 GCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAAACGTAAGCCCT 694584 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| ||||| | |||||| | |||| | || ||||| || ||| || ||||| || Sbjct 694583 GGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGCGCAAAAACTCCCTGAAAAGAAAATC 694524 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAG-ACTTTGTGTCAAA 117452 ||||| || || || || || | | | ||| || ||| | || || |||| | Sbjct 694523 CCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCAC----TGTCGAT 694468 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCAA 117511 |||||| | ||||| | |||||| | ||| || |||| || | ||||| || || Sbjct 694467 CCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCAATGGCATTGAA 694408 Query 117512 ATAACTGCTTCTTTTCAGATCCATCCTTAATGTA 117545 | |||| |||| |||| | ||| |||||||| Sbjct 694407 AAGTCTGC-TCTTCTCAGCTTGATCTTTAATGTA 694375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966124227600