Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq1990 695 0.0 >seq1990 Length=122890 Score = 695 bits (770), Expect = 0.0 Identities = 757/1002 (76%), Gaps = 2/1002 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | ||||||||| ||||| ||| || | |||||||| || |||| |||||| Sbjct 54241 TGGGGTCGCTTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTC 54182 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| | |||||||| ||||| || | |||||| |||| || || | || ||||| Sbjct 54181 GGTGTTTTAATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCAT 54123 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 || ||||| ||||| || || ||||| |||||||| || || ||||||| || | || Sbjct 54122 TGCAGCTCCTCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTA 54063 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 || |||||||||||||||| ||| | | ||| |||| || || ||| | ||||| Sbjct 54062 CGGAAACAACATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTT 54003 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 ||| || || |||||||| || || |||| || ||||| || ||||||||||||| | | Sbjct 54002 CTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGA 53943 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 | |||| | |||||| | |||| | | |||||||||||||||||||||||| Sbjct 53942 GTTAATCGTTCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 53883 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGC 180157 | || || || |||||||| || |||||| || |||||||| ||||| || || || Sbjct 53882 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGC 53823 Query 180158 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCC 180217 || ||||||| ||| | |||| || | |||||||| |||||||||| ||||| Sbjct 53822 TGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCC 53763 Query 180218 CCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCT 180277 | || || ||||| || ||||||| |||| |||| |||||||| || ||||||||||| Sbjct 53762 TTTAGGAATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCT 53703 Query 180278 GATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGC 180337 |||||||| ||||||||||| || ||||| ||||| ||||| || || || ||| || Sbjct 53702 TATGCACCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGC 53643 Query 180338 AATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCA 180397 ||||| ||||| | || || || | | |||||||| ||||| | |||||| Sbjct 53642 TATGCATGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGC 53583 Query 180398 GAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGG 180457 ||| |||||||||||||||||||| ||||| || ||||||||||| ||||| || || Sbjct 53582 TAACGCAGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGG 53523 Query 180458 ATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTT 180517 ||||| ||| | | || ||||| || || || |||||||| ||||| | ||||| Sbjct 53522 TTACTTTGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTT 53463 Query 180518 CTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCAT 180577 |||| | || || |||||||| || || ||||||||||||||| | || | ||||| || Sbjct 53462 CTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTAT 53403 Query 180578 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGT 180637 ||| |||||| | |||||||||||||||||||| || | |||| ||||||||||||| Sbjct 53402 GGCTTTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGT 53343 Query 180638 GCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGA 180697 | ||||||||||| ||| | ||||||| ||| || ||||||||||||||||| || Sbjct 53342 TATTAACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 53283 Query 180698 GCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 ||||| |||||||||||||| || ||| | || ||| ||| Sbjct 53282 ACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 553 bits (612), Expect = 2e-152 Identities = 726/1005 (72%), Gaps = 8/1005 (1%) Strand=Plus/Minus Query 181436 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTT 181495 ||||||||||| | | | ||||| ||||| ||||| || |||||||| ||| | |||||| Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 181496 CCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGG 181555 || |||||| || | | || || ||| | || || || |||||||| || || ||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 181556 TACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTG 181615 || || || |||||||| || || | || ||| |||||| || || || ||||| Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 181616 TCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAG 181675 || || |||||| | | | | ||||| | | ||| | |||||||| ||||| || Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 181676 GGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 181735 || |||||| || ||| ||| | || || || ||| |||| || || || || ||| Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 181736 GCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCGTCTAATCGGAA-- 181793 || || ||| | || || |||||| | | |||||||| |||||| | ||| | | Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAG----ATCCGTACA 44097 Query 181794 --TCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATT 181851 | || || || || || ||||||||||| || || |||||||| || || |||||||| Sbjct 44096 ATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATT 44037 Query 181852 TCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGC 181911 | | || || || || || ||||| ||||||| ||||| || ||||| ||||| || || Sbjct 44036 TTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGC 43977 Query 181912 GATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCA 181971 |||||||| ||| || | ||| |||| || || ||||| ||||| | || || || || Sbjct 43976 AATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCA 43917 Query 181972 TATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGAC 182031 ||||||||| |||||||| || |||| | || | | | ||| ||||| |||| || Sbjct 43916 TATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAAC 43857 Query 182032 CGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTC 182091 || || |||||| | | | |||| ||||| |||||||| ||| || || | | Sbjct 43856 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCC 43797 Query 182092 AACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTT 182151 ||||||| |||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct 43796 AACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTT 43737 Query 182152 CGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTAT 182211 |||| |||| ||| || || | |||||||||||||||||||| ||||| || || | Sbjct 43736 CGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAAC 43677 Query 182212 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 182271 ||| | |||| ||| | || || | ||||| | ||| | || | || |||||||| Sbjct 43676 TGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGA 43617 Query 182272 CTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAA 182331 ||||| || || ||||| | ||| | |||||||| || || || || || ||||| || Sbjct 43616 TTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAA 43557 Query 182332 GAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGA 182391 || ||||| | ||||||||| | ||||| ||| | ||| | ||||| || ||||| Sbjct 43556 AAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 43497 Query 182392 GAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || |||| ||||| ||||| || |||| | || ||||| || Sbjct 43496 AAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || ||||||||||||||| | Sbjct 94022 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAGT 93963 Query 141314 CCTACCTGGGGAG 141326 ||||||||||||| Sbjct 93962 CCTACCTGGGGAG 93950 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || ||||||||||||||| | Sbjct 114080 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAGT 114139 Query 141314 CCTACCTGGGGAG 141326 ||||||||||||| Sbjct 114140 CCTACCTGGGGAG 114152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610381616379600