Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1990 590 7e-164 >seq1990 Length=122890 Score = 590 bits (654), Expect = 7e-164 Identities = 711/956 (74%), Gaps = 12/956 (1%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCT-TACTCACAGCAGCAGCATGT-TTCATCG 169501 || ||||| |||||| |||||||||| | || || | || ||| | | ||| || || Sbjct 54190 GGATGGTTCGGTGTTTTAATGATTCC-TACTCTATTAACTGCAACTTC-TGTATTTATTA 54133 Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561 |||| ||||||||||| |||||||| ||||| || || ||| | || || || | |||| Sbjct 54132 TTGCTTTCATTGCAGCTCCTCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTT 54073 Query 169562 CT-TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 || ||||| || || |||||||||||||||| ||| | | || | || |||||| Sbjct 54072 CTCTTCTT-TACGGAAACAACATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATC 54014 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | |||||||||||||| |||||||| || | |||||||||||| | || || ||| Sbjct 54013 GGTTTGCACTTCTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGT 53954 Query 169681 GGTCCTTATCAGTTGGTAATC-TTC--CACTTCCTTATTGGTATCTCAGCATACATGGGA 169737 |||||||| |||| |||| ||| |||||| | ||||| | | |||||||| Sbjct 53953 GGTCCTTACGAGTT---AATCGTTCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGT 53897 Query 169738 AGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCT 169797 | |||||||||| ||| | ||||| ||||||||||||||| ||||||||| || Sbjct 53896 CGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCA 53837 Query 169798 GCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTC 169857 || || || | ||||| ||||| ||||| | |||||| ||||||| || ||| Sbjct 53836 GCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTC 53777 Query 169858 TCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCA 169917 ||||| |||||||| |||| ||||| |||||||||||||| ||| | || |||||||| Sbjct 53776 TCTGACGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCT 53717 Query 169918 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGA 169977 || || ||||| || ||||| || ||||||||| || ||||| || | ||||| || Sbjct 53716 GAACACAACATCCTTATGCACCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGC 53657 Query 169978 TCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACA 170037 ||| ||||| || ||||||||||| | || |||||| | ||||| | ||||| || Sbjct 53656 TCTCTATTCAGTGCTATGCATGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACT 53597 Query 170038 GAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATA 170097 ||| | ||||| ||| ||||| ||||| || ||||| |||||||| |||||||| Sbjct 53596 GAGAATGAGTCTGCTAACGCAGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATC 53537 Query 170098 GTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCA 170157 ||||| || ||||||||||||||| | | || ||||| || ||| || |||||||| Sbjct 53536 GTAGCTGCTCACGGTTACTTTGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCT 53477 Query 170158 AGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATG 170217 | | ||||||||||| |||| | || ||||| ||| || | ||||| || | | Sbjct 53476 CGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTA 53417 Query 170218 GGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT 170277 |||||| |||| ||||| |||||||| || ||||||||||| |||||||| |||||||| Sbjct 53416 GGTATCAGCACTATGGCTTTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGAC 53357 Query 170278 GCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATG 170337 | | || | | || |||| ||| | | ||| | || ||| | |||||| Sbjct 53356 AGTCAAGGTCGTGTTATTAACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATG 53297 Query 170338 GAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 ||||||||||||||| | || || ||||||||||| |||||| |||| |||| ||| Sbjct 53296 GAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 423 bits (468), Expect = 2e-113 Identities = 723/1050 (69%), Gaps = 33/1050 (3%) Strand=Plus/Minus Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582 |||| |||||| | | || |||||| ||| ||||| ||||||||||| |||| ||| Sbjct 44470 GGTTTATTTGATAGTATGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGG 44411 Query 170583 TCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACT 170642 |||||||| |||||| | || || || || | || | ||||| ||||| ||| || Sbjct 44410 TCTGGTCTATTACTTTTTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACA 44351 Query 170643 ACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAAC 170702 || || || || ||||||||||| ||||| | ||| ||| ||| | || || ||||| Sbjct 44350 ACTTTTGTAACTTCATGGTATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAAT 44291 Query 170703 TTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTTCTGTTC 170759 || ||||| || || ||||| || |||| ||| | | || | || | | || Sbjct 44290 TTTCTAACTGCTGCTGTTTCTACTCCTGCT-----AATAGTTTAGCACATTCGT-TATTA 44237 Query 170760 CTTT---GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTA 170816 || | |||| || ||||||||||| || |||||||| ||| | |||||| || Sbjct 44236 CTATTATGGGGTCCAGAAGCACAAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTA 44177 Query 170817 TGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTT 170876 |||| || || || | ||||||| |||| | ||||| || ||| | | |||||| Sbjct 44176 TGGACTTTCGTTGCTCTTCATGGAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTT 44117 Query 170877 GAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATC 170936 ||| | || || ||| | | ||||| |||||| | || || |||| || Sbjct 44116 GAGCTTGCTAGATCCGTACAATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATT 44057 Query 170937 GCAGTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCA 170996 || || || | | ||| | || || ||||| ||||| ||||||| || ||| Sbjct 44056 GCTGTTTTTGTTTCTGTATTTTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCA 43997 Query 170997 CCATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAAC 171056 || || ||||| ||||||||||| || | || |||||| | ||||||||||| ||| Sbjct 43996 CCTAGTTTTGGTGTTGCAGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAAC 43937 Query 171057 ATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTA 171116 || || || |||||||| |||||||| ||||| ||| | | || | || | ||| Sbjct 43936 TGGACTTTAAACCCATTTCATATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTA 43877 Query 171117 TGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACT 171176 ||||| |||||||||||||| || | || || || | |||||| | | || | Sbjct 43876 TGTGCTATTCATGGTGCAACTGTAGAAAATACTTTATTTGAAGAT------GGTGATGGT 43823 Query 171177 GATAATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACT 171236 | |||| |||||||||| ||| | || || || ||||||||| Sbjct 43822 GCAAATA---------------CATTCCGTGCGTTTAACCCAACTCAATCTGAAGAAACT 43778 Query 171237 TACAGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAAC 171296 || |||| ||||||| ||| | |||||||| || || || ||| |||| || |||||| Sbjct 43777 TATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTTCGGTGTTGCATTTTCTAAC 43718 Query 171297 AAAAGATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCT 171356 ||| | | || || ||| ||||| | || || || || | ||| | |||| || Sbjct 43717 AAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAACTGGTTTATGGATGAGTGCT 43658 Query 171357 ATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATA 171416 || || | || ||| |||| | || | |||| || |||||||| ||||| || || Sbjct 43657 ATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGATTTTGTTTCTCAGGAAATT 43598 Query 171417 AGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAA 171476 | ||||| |||||||| || || || ||||| |||||||| ||||| ||||| |||||| Sbjct 43597 CGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAAAAATATTCTTCTAAATGAA 43538 Query 171477 GGTATGAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAA 171536 ||||| | || |||||| || | || || || ||||| || | ||||||||||| Sbjct 43537 GGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAG 43478 Query 171537 GAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 || || ||||| | || ||||| |||||| Sbjct 43477 GAGGTTCTACCACGTGGAAACGCTCTTTAA 43448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579198392081600