Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq1990 664 0.0 >seq1990 Length=122890 Score = 664 bits (736), Expect = 0.0 Identities = 748/995 (75%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 |||||||| ||||| || ||| | |||||||| || |||| |||||||| || | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 |||||||| ||||| || | |||||| ||||| || || | || ||| | || ||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 ||||| || || || || |||||||| || || ||||||| || | || || ||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 ||||||||||| ||| | ||||| ||||| ||||| || | |||||||| || || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 |||||||| || || | ||||| ||| | || ||||||||||||| | | || | || Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 168162 CTTTCACTTCCTCATCGGTAT--CTATGCATACATGGGACGTGAATGGGAACTTTCATAT 168219 |||||||| | | ||| | || ||| |||||||| ||||| ||||||||| || Sbjct 53933 TCTTCACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTAC 53876 Query 168220 CGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGT 168279 ||||||||||||||||| |||||| ||||||||| || || || || || || || | | Sbjct 53875 CGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACT 53816 Query 168280 GCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGA 168339 || || ||| | | || || | |||||||| || |||||||| | ||||| | ||| Sbjct 53815 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGA 53756 Query 168340 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 168399 ||||| || || ||||||| |||| | || ||||||||||| ||||| || || ||||| Sbjct 53755 ATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCAC 53696 Query 168400 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 168459 || ||||| ||||| || || ||||| ||||| |||||| | | || ||||||||||| Sbjct 53695 CCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCAT 53636 Query 168460 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 168519 || || || ||||| | | | | || || ||||| | || || ||| Sbjct 53635 GGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCA 53576 Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 168579 ||||||||||| || ||||| |||||||| |||||||||||||| ||||| |||||||| Sbjct 53575 GGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTT 53516 Query 168580 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 168639 ||| | || || |||||||||||| || |||||||| || || || ||||||||| | Sbjct 53515 GGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTA 53456 Query 168640 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 168699 ||||| |||||||| || || ||||||||||| || | || || ||| ||||| ||| Sbjct 53455 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTC 53396 Query 168700 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 168759 ||| | |||||||||||||||||||| || | |||| |||| |||||||| | ||| Sbjct 53395 AACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAAC 53336 Query 168760 ACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 168819 || ||||| || | | ||||| ||| || |||||||||||||||||||| |||||| Sbjct 53335 ACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 53276 Query 168820 GCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 168854 || ||||||||||| || || | ||| ||| ||| Sbjct 53275 GCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 571 bits (632), Expect = 7e-158 Identities = 731/1005 (73%), Gaps = 8/1005 (1%) Strand=Plus/Minus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 ||||||||||| | | | ||||| |||||||| | ||||||||||||||| | ||| || Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 169379 CCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGG 169438 || || ||| || || | || || ||| | || |||||| | ||||| ||||| ||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 169439 TACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTC 169498 || || || ||| | ||| | ||| |||||||| ||| || || ||||||||||| Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 169499 AGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAA 169558 ||| |||||| | | | | ||| || | | | |||||||||||||||||||| Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 169559 GGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGT 169618 || |||||| ||| ||||||||||| || ||||| |||| || || || |||||||| Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 169619 GCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGT--CTTATTGGCA 169676 || ||||| || || || || ||| | | || ||||| | || | | || || Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGATCCGTA----CA 44097 Query 169677 --TCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTT 169734 | ||||||||||| || ||||| || ||||| || |||||||| ||||| ||| || Sbjct 44096 ATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATT 44037 Query 169735 TCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGC 169794 | | || ||||||||||| || || ||||| ||||| || ||||| || |||| Sbjct 44036 TTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGC 43977 Query 169795 AATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 169854 ||| ||| | ||| | || ||| | ||||| ||||| |||||||| || || ||||| || Sbjct 43976 AATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCA 43917 Query 169855 CATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTAC 169914 |||||||| || || ||| ||||||| | || | | | |||||| ||||||| || Sbjct 43916 TATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAAC 43857 Query 169915 AGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTC 169974 ||||| || || || | |||||| ||||| |||||||| ||| |||||| | | Sbjct 43856 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCC 43797 Query 169975 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 170034 || || ||||| |||||||||||||| || || ||||| |||||||| || ||||| Sbjct 43796 AACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTT 43737 Query 170035 CGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 170094 |||| |||| ||||||||||| |||||| | ||||| || ||| | ||||| || || | Sbjct 43736 CGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAAC 43677 Query 170095 GGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGA 170154 ||| | |||| ||||||| | |||| | ||| | ||| | || ||||| || Sbjct 43676 TGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGA 43617 Query 170155 TTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 170214 ||| || |||||| || | ||||| ||||| || |||||||| || || ||||| || Sbjct 43616 TTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAA 43557 Query 170215 AAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGA 170274 ||| || || | |||||||| ||||||| ||| ||||| || ||||| || ||||| Sbjct 43556 AAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 43497 Query 170275 AAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||| | | |||||||| || ||||| || | || ||||| || Sbjct 43496 AAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574459309969200