Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq1990 663 0.0 >seq1990 Length=122890 Score = 663 bits (734), Expect = 0.0 Identities = 750/997 (75%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||||| ||||| || |||||| | ||| | ||||| | || ||||||||||| ||| Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 ||||| || | ||||||| ||| | | ||| || ||| |||| || ||||| || || Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACTTC-TGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 ||||| ||||| || || ||| | || ||||| | ||| |||| | || |||||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 ||||||||| | ||| | | || |||| || |||||| | |||||||||||||| Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| ||| | | ||||| ||| | || || |||||||||||| |||| ||| Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTT---AAT 53937 Query 168790 C-TTC--CACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTATCAT 168845 | ||| |||||| || | || | || |||||||||| | |||||||| ||| | | Sbjct 53936 CGTTCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGC-T 53878 Query 168846 ACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCAT 168905 || | |||||||| | ||||||||| |||||| |||||||| || || | || || Sbjct 53877 ACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTA 53818 Query 168906 TTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAG 168965 ||| || ||| | | |||||| ||||||| || |||||||| ||||||||| ||| Sbjct 53817 CTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAG 53758 Query 168966 GAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGC 169025 |||| ||||| || |||||||||||| | || |||||||| || |||||||| ||||||| Sbjct 53757 GAATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGC 53698 Query 169026 ATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGC 169085 | || ||||| ||| || ||||| ||| | |||||||| ||||||||| || |||| Sbjct 53697 ACCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGC 53638 Query 169086 ATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACT 169145 ||||||| | ||||| || | ||||| | || ||||||||| | || ||| ||| Sbjct 53637 ATGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACG 53578 Query 169146 ATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACT 169205 ||||||||||| |||||||| |||||||| || || || || || || || || |||| Sbjct 53577 CAGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACT 53518 Query 169206 TCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCC 169265 | ||||||||||| ||||| || || || || |||||||| | | | ||||||||| Sbjct 53517 TTGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCT 53458 Query 169266 TAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCAT 169325 |||| | | || || ||| || | ||||| || | | |||||| | || ||||| | Sbjct 53457 TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTT 53398 Query 169326 TCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTC 169385 ||||||| ||||| || ||||| |||||||| ||||| || | | ||| | ||| Sbjct 53397 TCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTA 53338 Query 169386 CTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTA 169445 || |||| |||| | | ||| | || ||||||||||||||||| |||||||| |||| Sbjct 53337 ACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 53278 Query 169446 ACGCTCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 |||||||||||||||| ||||||||||| |||| ||| Sbjct 53277 ACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564427559515200