Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1990 553 2e-152 >seq1990 Length=122890 Score = 553 bits (612), Expect = 2e-152 Identities = 721/992 (73%), Gaps = 8/992 (1%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||||| ||||| ||| ||| | ||| | |||| | || ||||||||||| | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 ||||| || | | | || ||| | | || || |||| ||||||||||| ||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACTTCTGTATTTATTATTGCTTTCATTGCAGCTCCT 54113 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 171998 ||||| ||||| || || ||| | || || ||| | |||||| ||||| || || ||||| Sbjct 54112 CCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTT-TACGGAAACAA 54054 Query 171999 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTAT 172058 ||||||||||| ||| | | || | || || || ||| | ||||||||||| || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 172059 CTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAAT 172118 |||||||| || |||| ||||||||| | ||||| ||||||||||| |||| ||| Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTT---AAT 53937 Query 172119 C-TTC--CACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATA 172175 | ||| |||||| | | ||| | | |||||||| | |||||||||| || Sbjct 53936 CGTTCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTA 53877 Query 172176 CAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATT 172235 | | ||||||||| | || ||||| ||| ||||||||||| ||||| | || || Sbjct 53876 CCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTAC 53817 Query 172236 TGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGG 172295 |||||| ||| | | || ||| | ||||| || |||||||| |||||||| |||| Sbjct 53816 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGG 53757 Query 172296 TATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCA 172355 ||||| ||||| |||||||| ||| | ||||||||||| || || ||||| || ||||| Sbjct 53756 AATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCA 53697 Query 172356 TCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCA 172415 || ||||||||| || ||||| || | || || || ||| ||||| || ||||| Sbjct 53696 CCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCA 53637 Query 172416 CGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTA 172475 ||||| ||||| || || | ||||| | || || ||||| || || ||| Sbjct 53636 TGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGC 53577 Query 172476 CGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTT 172535 || |||||||| || ||||| |||||||| |||||||| ||||| || ||||||||||| Sbjct 53576 AGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTT 53517 Query 172536 TGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 172595 |||| | | || ||||| || ||| || |||||||| | | | ||||||||| | Sbjct 53516 TGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTT 53457 Query 172596 AGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATT 172655 ||| | || ||||| ||| || | ||||| || | | |||||| | || ||||| || Sbjct 53456 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTT 53397 Query 172656 CAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCC 172715 |||| | ||||||||||||||||||||||| ||||| || | | ||| || || Sbjct 53396 CAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAA 53337 Query 172716 TACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAA 172775 || |||| |||| | | ||| | || ||||| ||||||||||||||||||||| | || Sbjct 53336 CACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 53277 Query 172776 TGCACACAACTTCCCATTAGACCTTGCTTCTG 172807 || ||||||||||| ||||| | ||||||| Sbjct 53276 CGCTCACAACTTCCCTCTAGACTTAGCTTCTG 53245 Score = 399 bits (442), Expect = 3e-106 Identities = 723/1056 (68%), Gaps = 35/1056 (3%) Strand=Plus/Minus Query 172940 CAAGAGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCG 172999 ||| ||||| |||||| | | || |||||| ||| ||||| ||||| ||||| | | Sbjct 44475 CAAAAGGTTTATTTGATAGTATGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAG 44416 Query 173000 GATGGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAG 173059 | ||||||||||| |||||| | || || ||||| ||||| | ||||| ||||| || Sbjct 44415 GTTGGTCTGGTCTATTACTTTTTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAG 44356 Query 173060 GAACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAG 173119 | || || || || || ||||||||||| ||||| | || || ||| | ||||| Sbjct 44355 GTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTT 44296 Query 173120 CAAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTTC 173176 || ||| |||| || || || || || |||| ||| | | || | || | Sbjct 44295 GTAATTTTCTAACTGCTGCTGTTTCTACTCCTGCT-----AATAGTTTAGCACATTCGT- 44242 Query 173177 TGTTCCTTT---GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAG 173233 | || || | |||| || ||||||||||| ||| ||||||| ||| | |||| Sbjct 44241 TATTACTATTATGGGGTCCAGAAGCACAAGGAGATTTCACTCGTTGGTGTCAATTAGGAG 44182 Query 173234 GACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTC 173293 | ||||||| || || || | ||||||| |||| | ||||| || ||| | || | Sbjct 44181 GTCTATGGACTTTCGTTGCTCTTCATGGAGCTTTTGCTTTAATAGGCTTTATGTTGCGCC 44122 Query 173294 AGTTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTG 173353 | |||||| | || || ||| | | ||||| |||||| | || || |||| Sbjct 44121 AATTTGAGCTTGCTAGATCCGTACAATTACGTCCTTATAACGCAATTGCTTTTTCTGGCC 44062 Query 173354 TTATCGCAGTCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCT 173413 || || || || | | |||||||| |||||||| || || ||||||| | Sbjct 44061 CAATTGCTGTTTTTGTTTCTGTATTTTTAATTTACCCACTTGGTCAATCAGGTTGGTTTT 44002 Query 173414 TCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCC 173473 | |||||| || ||||| |||||||| || || | || |||||| | |||||||||| Sbjct 44001 TTGCACCTAGTTTTGGTGTTGCAGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCC 43942 Query 173474 ACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCAT 173533 | ||| || || || |||||||| |||||||| ||||| ||| | | || | || Sbjct 43941 ATAACTGGACTTTAAACCCATTTCATATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTC 43882 Query 173534 TACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAAT 173593 | ||||||| |||||||||||||| || | || || || | |||||| Sbjct 43881 TTTTATGTGCTATTCATGGTGCAACTGTAGAAAATACTTTATTTGAAGA----------- 43833 Query 173594 ATACTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAG 173653 | ||| ||| | | || ||| | || ||| | || || || |||| Sbjct 43832 -TGGTGATGGTGCAAAT---------ACATTCCGTGCGTTTAACCCAACTCAATCTGAAG 43783 Query 173654 AAACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTT 173713 |||||||| |||| ||||||| ||| | |||||||| || || || ||| | ||||||| Sbjct 43782 AAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTTCGGTGTTGCATTTT 43723 Query 173714 CAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACAT 173773 | |||||| | | || || ||| | ||| | || ||||| || | ||| | |||| Sbjct 43722 CTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAACTGGTTTATGGATGA 43663 Query 173774 CATCCATAGGTATCGTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAA 173832 | || || | || ||| | || |||| ||| |||| || || ||||| ||||| Sbjct 43662 GTGCTATTGGAGTAGTTGGTTTAGCT-TTAAATTTACGAGCTTATGATTTTGTTTCTCAG 43604 Query 173833 GAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTT 173892 || || | ||||| ||||| || || || || ||||| |||||||| ||||| ||||| Sbjct 43603 GAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAAAAATATTCTTCTA 43544 Query 173893 AATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTT 173952 ||||||||||| | || |||||| || || |||||| || ||||| || | ||||| Sbjct 43543 AATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGAAAATCTTGTATTC 43484 Query 173953 CCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 ||||| || || ||||| | || ||||| |||||| Sbjct 43483 CCAGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 43448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588036572226400