Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq1990 639 2e-178 >seq1990 Length=122890 Score = 639 bits (708), Expect = 2e-178 Identities = 733/981 (75%), Gaps = 6/981 (1%) Strand=Plus/Minus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 |||||||| ||||| || || | |||||||| || |||| |||||||| || | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503 |||||||| ||||| || | ||||| ||||| || || | || ||| | || ||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 ||||| || || || || |||||||| || || ||||||| || | || || ||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 ||||||||||| ||| | | || |||| || || ||| | |||||||| || || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 |||||||| || || ||||||| ||||| || ||||||||||||| | | | | || Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 | |||||| | | || | | ||||||||| ||||| |||||||| ||||| Sbjct 53933 TCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCG 53874 Query 162744 TCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGGC 162803 | | ||||||||||| |||||| || ||||| || || |||||||| || || | || Sbjct 53873 TTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGC 53814 Query 162804 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTAT 162863 || ||| || |||| || | |||||||| |||||||||| ||||| || || || Sbjct 53813 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAAT 53754 Query 162864 CAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCC 162923 | |||||| ||||||| |||| |||| |||||||| || |||||||| || ||||| || Sbjct 53753 CTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCC 53694 Query 162924 CTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGG 162983 ||||||||| | ||||| || ||||| |||||||| || || |||||||| ||||| || Sbjct 53693 ATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGG 53634 Query 162984 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 163043 ||| || || || || | ||||||| || ||||| | |||||| ||| || Sbjct 53633 TTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGG 53574 Query 163044 TTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGG 163103 ||||||||| |||||||| ||||| || ||||||||||| || || || |||||||| || Sbjct 53573 TTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGG 53514 Query 163104 TCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 163163 | | || || |||||||| || || |||||||| ||||| || ||||||||| | || Sbjct 53513 TAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGC 53454 Query 163164 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--ACCATGGCATTC 163221 ||| |||||||| || || ||||||||||| || | || | ||| || ||||| ||| Sbjct 53453 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGG--TATCAGCACTATGGCTTTC 53396 Query 163222 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 163281 ||| | |||||||||||||||||||| || | |||| |||| |||||||| | ||| Sbjct 53395 AACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAAC 53336 Query 163282 ACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAAT 163341 || ||||| ||| | | |||||||| | ||||||||||||||||| || || || Sbjct 53335 ACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 53276 Query 163342 GCTCACAACTTCCCACTTGAC 163362 |||||||||||||| || ||| Sbjct 53275 GCTCACAACTTCCCTCTAGAC 53255 Score = 542 bits (600), Expect = 3e-149 Identities = 727/1009 (72%), Gaps = 2/1009 (0%) Strand=Plus/Minus Query 163631 TGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTTC 163690 ||||||||||||| | | || ||||| |||||| | ||||||||||| || ||||| Sbjct 44454 TGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTT 44395 Query 163691 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGT 163750 |||| |||||| | | | ||||| ||| |||| ||||||||||| || || || | Sbjct 44394 TTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCAT 44335 Query 163751 GGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTCACAGCGGCTG 163810 |||| || |||||| |||| | || ||| | || ||| ||||||||| || || |||| Sbjct 44334 GGTATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTG 44275 Query 163811 TGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTC 163870 | || || |||||| | | | | ||||| | | || | |||||||| || || | Sbjct 44274 TTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCAC 44215 Query 163871 AGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACG 163930 | || |||||| || ||| ||| | || || || |||| ||| || || || || | Sbjct 44214 AAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATG 44155 Query 163931 GAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGCCTGATTGGAA 163990 |||| |||||| | || || || ||| | || |||||||| |||||| | | | || Sbjct 44154 GAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGA-TCCGTACAA 44096 Query 163991 TCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTT 164049 | | | || || || || |||||||| ||||| || |||||||| || ||| ||| ||| Sbjct 44095 TTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTT 44036 Query 164050 CTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCA 164109 | || ||||| || ||||||||| ||||||| || || || |||||| || |||||| Sbjct 44035 TTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGCA 43976 Query 164110 ATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCAT 164169 || ||| ||||| | |||||| | ||||| || |||||||||||||| ||||| || ||| Sbjct 43975 ATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCAT 43916 Query 164170 ATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACA 164229 ||||||||||||||||| | | || | || | ||| ||||||||| || | || Sbjct 43915 ATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAACT 43856 Query 164230 GTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCG 164289 || |||||||| || | ||||||||| || ||||| || || |||||| | | Sbjct 43855 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCA 43796 Query 164290 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 164349 || || ||||| |||||||||||||| || || ||||| |||||||| || |||||| Sbjct 43795 ACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTTC 43736 Query 164350 GGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 164409 |||||||| ||||||||||| || ||| | ||||| || ||| | ||||| || || | Sbjct 43735 GGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAACT 43676 Query 164410 GGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGAT 164469 ||| |||||| ||||||| | |||| | ||| | ||| | || ||||| ||| Sbjct 43675 GGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGAT 43616 Query 164470 TTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAG 164529 ||||| ||| || ||| | ||||| ||||| ||||| || || ||||| || || || Sbjct 43615 TTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAAA 43556 Query 164530 AACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGCCAGGAGAA 164589 || || | | || ||||| | ||||| ||| | ||| | || ||||| ||| Sbjct 43555 AATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGAA 43496 Query 164590 CGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 |||| |||||||| || || || || | || || || ||||||| Sbjct 43495 AATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 43447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557570130098000