Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq1990 652 0.0 >seq1990 Length=122890 Score = 652 bits (722), Expect = 0.0 Identities = 737/994 (74%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||||| ||||||||||||||| | ||||| || || |||| |||||||| ||| | Sbjct 54233 CTTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTT 54174 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 ||||| ||||| | | | ||||| ||||| || || || || ||| | | |||| Sbjct 54173 AATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTC 54115 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 ||||||| || || ||||||||||| || || ||| ||||||| || | || || |||| Sbjct 54114 CTCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACA 54055 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 |||||||||||| ||| | | ||| ||||| ||||| ||| | |||||||| || | Sbjct 54054 ACATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAA 53995 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAG 167385 | |||||||| || || | || || ||| | ||||| |||||||||| | | | | | Sbjct 53994 TTTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCG 53935 Query 167386 TTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 167445 || | |||||| | |||| | | ||| |||||||||||||||||||| |||| Sbjct 53934 TTCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACC 53875 Query 167446 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTG 167505 || | ||||||||||| |||||| ||||||||| || ||||| || || || || ||| Sbjct 53874 GTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTG 53815 Query 167506 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTA 167565 |||| ||| | |||| || | |||||||| |||||||||| |||||| | || | Sbjct 53814 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAA 53755 Query 167566 TCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 167625 |||||||||| ||||||| |||| |||| |||||||| || ||||||||||| ||||||| Sbjct 53754 TCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACC 53695 Query 167626 CCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACG 167685 | ||||| ||||| || || ||||| |||||||| || ||||| |||||||| ||||| | Sbjct 53694 CATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATG 53635 Query 167686 GTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 167745 |||| | || || || | | |||||||| || || | |||||| ||| | Sbjct 53634 GTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAG 53575 Query 167746 GTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCG 167805 |||||||||| ||||| || ||||| || || |||||||| |||||||| |||||||| | Sbjct 53574 GTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTG 53515 Query 167806 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGG 167865 || | | || ||||||||||| ||| |||||||| || || | ||||||||||| | Sbjct 53514 GTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAG 53455 Query 167866 CAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA 167925 | || |||||||| || |||||||||| |||| Sbjct 53454 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCA 53395 Query 167926 ACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTA 167985 || | |||||||||||||||||||| ||| | |||| ||| ||| ||| | | Sbjct 53394 ACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAACA 53335 Query 167986 CTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 168045 ||||||| ||| | ||||||||||| || ||||||||||||||||| || ||||| | Sbjct 53334 CTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACG 53275 Query 168046 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 168079 |||||||||||||||| ||| | ||| ||| ||| Sbjct 53274 CTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 567 bits (628), Expect = 8e-157 Identities = 729/1005 (73%), Gaps = 8/1005 (1%) Strand=Plus/Minus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||||| | | | || ||||| || ||||| ||||||||||| || | |||||| Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || |||||| || || | || || ||| |||| || || |||| || || ||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 |||||||| || ||||| || || ||| | || || || ||||| ||||| || ||| Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 |||||| || || | | | ||||| | | || | |||||||| || |||||| Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 || |||||| | ||||||||| | ||||| || ||| |||| || || || || || Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA-- 168852 ||||| ||| |||| || || ||| | || || ||||| || || | ||| ||| Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAG----ATCCGTACA 44097 Query 168853 --TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 168910 | ||||| || || || ||||| || ||||| || || |||||||||||| || || Sbjct 44096 ATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATT 44037 Query 168911 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGC 168970 | | || ||||| || |||||||| |||||||||| || || ||| || || |||| Sbjct 44036 TTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGC 43977 Query 168971 AATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCA 169030 ||| ||||||||| || | ||| | ||||| |||||||||||||| | || |||||||| Sbjct 43976 AATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCA 43917 Query 169031 TATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTAC 169090 ||||||||| || || || | ||||||| || | | | ||| |||||||||| || Sbjct 43916 TATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAAC 43857 Query 169091 AGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAG 169150 ||||| |||||| | | | |||||||||| |||||||| ||| || ||| || Sbjct 43856 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCC 43797 Query 169151 CACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 169210 ||||| || || || ||||| |||||||| || ||||||||||||||||| ||||| Sbjct 43796 AACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTT 43737 Query 169211 TGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 169270 ||| |||| || ||| || | |||||||||||||||||||| ||||| || || | Sbjct 43736 CGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAAC 43677 Query 169271 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 169330 ||| | |||| ||| | || || | ||||| | ||| | || | || |||||||| Sbjct 43676 TGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGA 43617 Query 169331 CTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAA 169390 |||||||| || || || | ||||| ||||| || || ||||| || || ||||| || Sbjct 43616 TTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAA 43557 Query 169391 GAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGA 169450 || || || | || |||||| ||||||| ||| | ||| || ||||| |||||||| Sbjct 43556 AAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 43497 Query 169451 GAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 || |||| ||||| ||||| || || || || || || || || Sbjct 43496 AAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560594054876000