Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq1990 607 1e-168 >seq1990 Length=122890 Score = 607 bits (672), Expect = 1e-168 Identities = 736/997 (74%), Gaps = 8/997 (1%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || || || |||||||| ||||| || || | ||| | || ||||| ||||| | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||||||| || | | || || || || || | || ||||| || || ||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACTTCTGTATTTATTATTGCTTTCATTGCAGCTCCT 54113 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 ||||| ||||| || || ||| | ||||| ||| |||||||| | | || || |||||| Sbjct 54112 CCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAAC 54053 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 |||||||||| |||| | | |||| ||| || ||||| || ||||||||||| || Sbjct 54052 ATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAATT 53993 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| || | ||||| |||||||| ||||| ||||| |||| | | | | ||| Sbjct 53992 TGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGA---GTTAATC 53936 Query 215594 -TTC--CACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTAC 215650 ||| |||||| | ||||| | || ||| || | ||||||||||| ||| Sbjct 53935 GTTCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTAC 53876 Query 215651 AGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTT 215710 | ||||||||| | ||||||||| |||||| || || || ||||| | ||||| | Sbjct 53875 CGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACT 53816 Query 215711 GCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGA 215770 || || ||| | | || ||| | ||||| || |||||||| | |||||| | ||| Sbjct 53815 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGA 53756 Query 215771 ATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCAC 215830 |||||||| || ||||||| |||| |||| ||||| ||||| |||||||| || |||||| Sbjct 53755 ATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCAC 53696 Query 215831 CCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCAC 215890 |||||||||||| | ||||| |||||||| |||||||| || | ||| ||| ||||| Sbjct 53695 CCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCAT 53636 Query 215891 GGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTAC 215950 ||||| | || || || | ||||| | || || |||||| | || ||| ||| Sbjct 53635 GGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCA 53576 Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 ||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||| Sbjct 53575 GGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTT 53516 Query 216011 GGTCGCCTCATCTTCCAATACGC-ATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 216069 ||| | | || ||||||||||| | |||| |||||||| | | | ||||||||| | Sbjct 53515 GGTAGATTAATTTTCCAATACGCTAGCTTT-AACAACTCTCGTTCTTTACACTTCTTCTT 53457 Query 216070 TGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTT 216129 || || | ||||| | |||||||| |||||| | ||| || |||||||| || Sbjct 53456 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTT 53397 Query 216130 CAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCC 216189 |||| | |||||||||||||||||||| ||||| || ||| ||| |||||| Sbjct 53396 CAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAA 53337 Query 216190 TACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAA 216249 |||||||| ||| | | ||| | || |||||||||||||| ||||| || ||||| Sbjct 53336 CACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 53277 Query 216250 CGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 ||||||||||||||| ||||||| ||| ||| |||| Sbjct 53276 CGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAA 53240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745063066095200