Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1990 731 0.0 >seq1990 Length=122890 Score = 731 bits (810), Expect = 0.0 Identities = 763/996 (77%), Gaps = 8/996 (1%) Strand=Plus/Minus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 |||||||| |||||||| || | || || || || |||| ||||| ||||| | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 ||||| || ||||| || | ||||| ||||| || || |||||||| | ||||| || Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 |||||| ||||| || |||||||| || || || ||||||| || | || || ||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 ||||||||||| |||| | |||| | || || || ||| | |||||||||||||| Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGT 182092 ||||||||||| || ||||||| ||||| || ||||||||||||| | | | | || Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 182093 TTTCCACTTCCTGATCGGCATCTACGC---CTACATGGGACGTGAGTGGGAACTTTCTTA 182149 | | |||||| | | || | || || ||||||||| ||||||||||||||| || Sbjct 53933 TCTTCACTTCTTACTTGG--TGTA-GCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTA 53877 Query 182150 CCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATC 182209 ||| |||||||||||||| |||||| ||| ||||| || ||||| || || || || | Sbjct 53876 CCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTAC 53817 Query 182210 TGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGG 182269 |||||| ||||| |||| || | |||||||| ||||| || | ||||| | || Sbjct 53816 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGG 53757 Query 182270 AATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCA 182329 |||||| || || ||||||| ||| | || ||||||||||| |||||||| |||||||| Sbjct 53756 AATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCA 53697 Query 182330 TCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCA 182389 || ||||||||| | |||||||| |||||||||||||| || || || ||||| ||||| Sbjct 53696 CCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCA 53637 Query 182390 CGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTA 182449 ||||| || || || || | ||||||| || |||||| | ||||| ||| Sbjct 53636 TGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGC 53577 Query 182450 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTT 182509 ||||||||||| |||||||| ||||| || || |||||||| || || || || ||||| Sbjct 53576 AGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTT 53517 Query 182510 CGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 182569 ||| | || || ||||||||||| || |||||||| ||||| || ||||||||| | Sbjct 53516 TGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTT 53457 Query 182570 TGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATT 182629 ||||| |||||||| || || ||||||||||| ||| | ||| || ||| ||||| || Sbjct 53456 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTT 53397 Query 182630 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAA 182689 |||| | |||||||||||||||||||| || | |||| |||| |||||||| |||| Sbjct 53396 CAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAA 53337 Query 182690 CACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 182749 ||||||||| || | | ||||||||| ||||||||||||||||||||||| ||||| Sbjct 53336 CACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 53277 Query 182750 CGCACACAACTTCCCACTAGATCTTGCTGCTGCTGA 182785 ||| ||||||||||| ||||| | ||| ||| ||| Sbjct 53276 CGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 600 bits (664), Expect = 1e-166 Identities = 742/1012 (73%), Gaps = 10/1012 (1%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | | | || || ||||| ||||| || |||||||| || ||||| || Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || |||||| || | | || || ||| |||| || ||| ||||||| || ||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 183372 ||||| |||||| | ||| || ||| | |||||| ||| ||||| || || ||||| Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 183373 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAA 183432 || || |||||| | | | | ||||| | | || | |||||||| || | ||| Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 183433 GGGGACTTTCAA-CGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 || || ||||| || ||||| ||| | || || || |||| ||| || || || || || Sbjct 44212 GGAGA-TTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGG 44154 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTA- 183550 || |||||| | || || || ||| | || || ||||| |||||| | || ||| Sbjct 44153 AGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAG----ATCCGTAC 44098 Query 183551 ---TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTAT 183607 | |||||||| || || ||||| || ||||| || |||||||||||||| ||||| Sbjct 44097 AATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTAT 44038 Query 183608 TCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAG 183667 | | || || ||||| ||||| || ||||| |||||||||||||| || || |||| Sbjct 44037 TTTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAG 43978 Query 183668 CAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCC 183727 |||| || ||||| | || ||| | || |||||||| |||||||| |||||||| || | Sbjct 43977 CAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTC 43918 Query 183728 ATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCA 183787 ||||||||||||||||||| | | |||| || || | ||||||| ||||||| | Sbjct 43917 ATATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAA 43858 Query 183788 CAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATT 183847 | ||||| ||||| || | ||||||||| || ||||| |||||| || ||| | Sbjct 43857 CTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACC 43798 Query 183848 CCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCT 183907 | |||||| ||||| || ||||||||||||||||| || ||||||||||| ||||||| Sbjct 43797 CAACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCT 43738 Query 183908 TCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCA 183967 |||| ||||| ||| || || ||||||||||| ||||||||| | ||||| || || | Sbjct 43737 TCGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAA 43678 Query 183968 TGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATG 184027 ||| | ||| | | ||||||| | |||| | ||| | ||| | || ||||||| Sbjct 43677 CTGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATG 43618 Query 184028 ATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAA 184087 ||||||| ||| || || | ||||| ||||| || |||||||| || || ||||| | Sbjct 43617 ATTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTA 43558 Query 184088 AGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATG 184147 | || || ||||| |||||||| | ||||| ||| | ||| || ||||| || |||| Sbjct 43557 AAAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATG 43498 Query 184148 AGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 | ||| || |||| ||||||||||| |||| | || || ||||||| ||| Sbjct 43497 AAAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 43446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611680784062000