Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1990 762 0.0 >seq1990 Length=122890 Score = 762 bits (844), Expect = 0.0 Identities = 764/989 (77%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||||| ||||| || ||| | ||||| ||||| |||| |||||||||||| | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 164824 ATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCC 164882 ||||| || | | | | || || | ||| ||||||| ||| ||||| || ||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 ||||| || ||||||||||| ||||| ||||| | |||||||| | ||||| ||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 164943 CATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTAT 165002 ||||||||||| |||| || | || ||||| || ||||| | |||||||| || || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 165003 TTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGT 165062 |||||||||||| || | ||||||||| | |||||||||||||||||| |||| | || Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 165063 CTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 165122 | |||||| | | ||||||||||||||||||||||||||||||||||| ||||| Sbjct 53933 TCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCG 53874 Query 165123 CCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGC 165182 | ||||||||||||||||| || |||||| || ||||| || |||||| | || Sbjct 53873 TTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGC 53814 Query 165183 AGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTAT 165242 |||||| || |||| || | |||||||| || |||||||| ||||||||| | || || Sbjct 53813 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAAT 53754 Query 165243 CTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCC 165302 |||||||||||| |||| ||| | || |||||||| ||||| ||||| |||||||| || Sbjct 53753 CTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCC 53694 Query 165303 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 ||||||||||| || || ||||| ||||||||||| ||||| ||| |||||||||||| Sbjct 53693 ATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGG 53634 Query 165363 AAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGG 165422 | || ||||| | |||| || || ||||| | ||| | ||| || Sbjct 53633 TTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGG 53574 Query 165423 TTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGG 165482 ||| |||||||| ||||| ||||| || || |||||||| ||||| ||||| ||||| || Sbjct 53573 TTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGG 53514 Query 165483 TCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGC 165542 | | | |||||||||||||| ||| ||||| || ||||| | ||||||||| | || Sbjct 53513 TAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGC 53454 Query 165543 AGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 165602 || ||||||||||| ||||||||||||||||| | ||| | ||||| ||||| ||||| Sbjct 53453 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAA 53394 Query 165603 CCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTAC 165662 | | |||||||||||||||||||| ||| ||||||| ||||| | || || Sbjct 53393 CTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAACAC 53334 Query 165663 TTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 165722 |||||||||| | | ||||||||| || |||||||||||||||||||| |||||||| Sbjct 53333 TTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGC 53274 Query 165723 TCACAACTTCCCCCTCGACCTCGCTGCTG 165751 |||||||||||| || ||| | ||| ||| Sbjct 53273 TCACAACTTCCCTCTAGACTTAGCTTCTG 53245 Score = 600 bits (664), Expect = 1e-166 Identities = 736/1005 (73%), Gaps = 0/1005 (0%) Strand=Plus/Minus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 || |||||||| | | |||| ||||| || ||||| ||||||||||| || | ||| || Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || |||||| || || | || || ||| | || || || ||||| || || ||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTT 166352 |||||||||||| | || ||| |||| | || ||| || ||||| ||||| || ||| Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 166353 TCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAA 166412 |||||||| || || | | | ||||| || | || | |||||||| || || ||| Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 166413 GGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGT 166472 || |||||| | ||||| ||| | ||||| || ||| | || |||||||| || || Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 166473 GCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCGTCTAGTAGGTATT 166532 |||||||| |||| || || ||| | || || ||||| | ||| | ||| | Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGATCCGTACAATTA 44093 Query 166533 CGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTC 166592 ||||| || || ||||| ||||||||||| || |||||||| || ||| ||| ||| | Sbjct 44092 CGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTTTTA 44033 Query 166593 ATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATC 166652 || ||||| || |||||||| |||||||||| || || ||| || || ||||||| Sbjct 44032 ATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGCAATT 43973 Query 166653 TTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATG 166712 ||||||||| | | ||| | ||||| ||||| |||||||| | ||||||||||||||| Sbjct 43972 TTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCATATG 43913 Query 166713 ATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTA 166772 ||||| || || || | | || | ||| | | | ||| || ||||||| || ||| Sbjct 43912 ATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAACTGTA 43853 Query 166773 GAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACT 166832 || || ||| | | | |||||||||| |||||||| ||| || || || | ||| Sbjct 43852 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACT 43793 Query 166833 CAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGT 166892 ||| |||||||| ||||| ||||||||||| ||||| | |||||||| ||||||||| Sbjct 43792 CAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTTCGGT 43733 Query 166893 ATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGT 166952 |||| ||| ||| || | |||||||||||||||||||| ||||| || || | ||| Sbjct 43732 GTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAACTGGT 43673 Query 166953 CTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTT 167012 | |||| ||| | || || | ||||| | ||| | || | || |||||||| ||| Sbjct 43672 TTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGATTTT 43613 Query 167013 GTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAAC 167072 ||||| || ||| | | ||||| || || ||||| |||||||| || || || || || Sbjct 43612 GTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAAAAAT 43553 Query 167073 ATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGT 167132 ||||| | ||||| ||||| ||| ||||||||||| || ||||| |||||||| | | Sbjct 43552 ATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGAAAAT 43493 Query 167133 TTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 | |||||||| || |||||||| || | || |||||||| ||| Sbjct 43492 CTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 43448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563646778937600