Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq1990 592 2e-164 >seq1990 Length=122890 Score = 592 bits (656), Expect = 2e-164 Identities = 723/986 (73%), Gaps = 0/986 (0%) Strand=Plus/Minus Query 169696 GATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATC 169755 || ||||| || ||||| | |||||| | || | || ||||||||||| || ||||| Sbjct 54226 GACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTAATGATT 54167 Query 169756 CCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTG 169815 || ||||||| | ||| | | ||||| |||||||||| |||||||| ||||| Sbjct 54166 CCTACTCTATTAACTGCAACTTCTGTATTTATTATTGCTTTCATTGCAGCTCCTCCTGTA 54107 Query 169816 GACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATC 169875 || || ||||| ||| | || ||||| | ||||| | | || || |||||||||||| Sbjct 54106 GATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAACATCATC 54047 Query 169876 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAA 169935 |||| ||| | | || |||| || |||||| | |||||||| || ||||||||| Sbjct 54046 TCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAATTTGGGAA 53987 Query 169936 GCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCAC 169995 || || | | ||||| ||| | || |||||||||||||| | ||| | | | ||| Sbjct 53986 GCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGTTCTTCAC 53927 Query 169996 TTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGT 170055 ||| | | || | || |||||||||| | |||||||||| |||||||||||| Sbjct 53926 TTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGT 53867 Query 170056 ATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTC 170115 ||||||||||||||| ||| |||||||| ||||| || | || || ||||| ||| Sbjct 53866 ATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTC 53807 Query 170116 TTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGT 170175 || | || || | ||||| ||| ||||| ||||| |||||| |||| ||||| ||| Sbjct 53806 TTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAATCTCTGGT 53747 Query 170176 ACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCAT 170235 || || ||||||||| | || |||||||| || |||||||| ||||||||||||||||| Sbjct 53746 ACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCCATTCCAC 53687 Query 170236 ATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTT 170295 ||| || || |||||| | ||||| || | || ||| || ||||| ||||| | Sbjct 53686 ATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGGTTCCTTA 53627 Query 170296 GTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAA 170355 ||||| || | ||||| | || || || || || ||||| ||| || ||||| Sbjct 53626 GTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGGTTACAAG 53567 Query 170356 TTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTT 170415 || || ||||| |||||||| |||||||| || || || || || |||||||||||| | Sbjct 53566 TTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGGTAGATTA 53507 Query 170416 ATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTC 170475 || |||||||| |||||||||||||| |||| | | ||||||||| | ||| | | Sbjct 53506 ATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGG 53447 Query 170476 CCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAAT 170535 ||||||||| | |||||||| ||| || | ||||| |||| ||||| || ||| | || Sbjct 53446 CCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAACTTAAAC 53387 Query 170536 GGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCA 170595 || || ||||||||||| || | || || | ||| || || || ||||| Sbjct 53386 GGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAACACTTGGGCT 53327 Query 170596 GACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAAC 170655 ||| | | ||| | || ||||| ||||||||||| |||||||| ||||| || |||||| Sbjct 53326 GACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAAC 53267 Query 170656 TTCCCACTTGACTTGGCAACTGCTGA 170681 ||||| || ||||| || ||| ||| Sbjct 53266 TTCCCTCTAGACTTAGCTTCTGTTGA 53241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582833501656000