Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq1990 628 3e-175 >seq1990 Length=122890 Score = 628 bits (696), Expect = 3e-175 Identities = 727/974 (75%), Gaps = 4/974 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || ||||||||||| ||||| |||||||||||||| ||||| || | Sbjct 53262 GGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATG 53321 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | || ||||| || || | |||||| ||| || || |||| | || |||||||| Sbjct 53322 ATGTCAGCCCAAGTGTTAATAACACGACCTTGACTGTCAACAACAGATTGGTTGAAGTTG 53381 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || || || | || || ||||| ||||| | ||| | |||| ||||| || || || Sbjct 53382 AAACCGTTTAAGTTGAAAGCCATAGTGCTGATACCTAATGCAGTGAACCAGATACCTACT 53441 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| ||||| | ||||||| ||||| ||| ||| || ||| Sbjct 53442 ACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAGCTAGCGTATTGG 53501 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 || || | | ||| ||||| ||||||||||| || || || |||||||| || |||||| Sbjct 53502 AAAATTAATCTACCAAAGTAACCGTGAGCAGCTACGATGTTGTAAGTTTCTTCCTCTTGA 53561 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || ||||||||||| ||| || |||| || |||||||| ||||||| | ||| Sbjct 53562 CCAAACTTGTAACCTGCGTTAGCAGACTCATTCTCAGTAGTTTCACGGATTAAACTTGAA 53621 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||||| ||||||||||||||||| || || Sbjct 53622 GTTACTAAGGAACCATGCATAGCACTGAATAGAGAGCCACCGAATACACCAGCTACACCA 53681 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 | |||||| || || |||||||||||||| ||||| || ||||| |||| |||| ||||| Sbjct 53682 AGCATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAACACAATCATGAAGTTG 53741 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || | ||||| || |||||||| ||||| || | || || Sbjct 53742 AAAGTACCAGAGATTCCTAAAGGCATACCGTCAGAGAAGCTTCCTTGACCAATTGGGTAG 53801 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || || ||||| ||||| || || |||||| |||||| ||| Sbjct 53802 ATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATATGCAACAGCGATCCAAGGA 53861 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAA-ATGCACCAAT 84643 |||||||| | ||| || ||||||||| ||||||||||||| ||||| | |||||| Sbjct 53862 CGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCCATGT-AGCAAGCTACACCAAG 53920 Query 84644 CAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACT 84703 | |||||||| || | | | ||||| ||||| || || |||||||| || | Sbjct 53921 TAAGAAGTGAAGAACGATTAACTCGTAAGGACCACCGTTGTAAAGCCATTCATCAACGGA 53980 Query 84704 TGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGC 84763 || ||||||||||| || ||||| || | ||| ||||| ||| | || | | || Sbjct 53981 AGCAGCTTCCCAAATTGGGTAGAAGTGCAAACCGATAGCTGCAGAAGTAGGGATGATAGC 54040 Query 84764 ACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTC 84823 | |||| ||||||||||||||||| | |||||||||| || |||||||||||||| || Sbjct 54041 AGCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGAAACAGGCTCACGGATACCATC 54100 Query 84824 AATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTA 84882 |||||| || || || || ||| ||| ||||| || || ||||| ||| |||| | || Sbjct 54101 AATATCTACAGGAGGAGCTGCAATGAAAGCAATAATAAATACAGA-AGTTGCAGTTAATA 54159 Query 84883 GAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGA 84942 |||| |||||||| | | || ||||| || | || | ||||| | |||| ||| | Sbjct 54160 GAGTAGGAATCATTAAAACACCGAACCATCCGATGTAAAGGCGGTTTTCAGTGCTGGTAA 54219 Query 84943 CCCAATCACAGAAG 84956 |||| || |||||| Sbjct 54220 CCCAGTCGCAGAAG 54233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571259389569200