Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1886 140 4e-28 seq1794 96.9 4e-15 seq1948 91.5 2e-13 >seq1886 Length=1372085 Score = 140 bits (154), Expect = 4e-28 Identities = 243/350 (69%), Gaps = 5/350 (1%) Strand=Plus/Minus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 ||| || ||||||||||| || || || ||||| |||| || | ||| || |||| Sbjct 694654 ACAGCAGGCATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAA 694595 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA- 19071 | || | || ||||| || ||||| || || | ||| || || | ||||| ||| Sbjct 694594 ACGTAAGCCCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGC-GCAAAAACTCCCT 694536 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 |||||||| || || || || || ||||| | | ||| ||| || | || || || Sbjct 694535 GAAAAGAAAATCCCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCA 694476 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 | | |||||||| || ||||| ||||||||| | || || || || ||||| Sbjct 694475 CTGTCG---ATCCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCA 694419 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA 19251 || | ||| || || | |||| || |||||||| || || || | ||| ||| Sbjct 694418 ATGGCATTGAAAAGTCTGCTCTTCTCAGCTTGATCTTTAATGTACGCCTCCAACAACAAA 694359 Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAA 19301 |||||||||||||| ||||| || || ||||| ||||| |||||||| || Sbjct 694358 CTGTACATTTCTGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAA 694309 >seq1794 Length=856596 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 47016 CGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTT 47075 |||||||| ||||| || || || |||||| |||| | ||||| |||| | ||| Sbjct 305608 CGTAAATAGTACATTCCTGTTTTCAAACCTTTGGTCCAGCTGTAGAAGTGCAGAGAAGTC 305549 Query 47076 AATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAAT 47135 || || | | | |||| |||||||| || | | |||||||||||||| || Sbjct 305548 AACTTTCCAAAGTTCGGTTGGTCCATATGAATGTTCAAACTCTGACTCTGATCAATGAAA 305489 Query 47136 GCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTA 47195 |||||||| |||||||||| || | ||| ||||||| |||||||| ||||| | Sbjct 305488 GCACCTCTCGCAGCTGCCATGTCCACAATTGCCCTTTGCTTAATCTCCCAAACTGTCCTG 305429 Query 47196 TA-AATTTGTTTAAT 47209 || | ||| |||||| Sbjct 305428 TATATTTTCTTTAAT 305414 >seq1948 Length=2296919 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 19138 TGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAA 19197 || ||||||||||| ||||| || || ||||| | |||||||| || || || || | Sbjct 1731821 TGGATCCATTTCAGAGCCCATTCTGCTTTCTTGGTGACACATGGTATGGTTTCAATGGCG 1731880 Query 19198 TTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTAC 19257 || || || | ||| | |||||| | ||||| || | || |||||||||| Sbjct 1731881 TTGAAGAGCCGATTTTTCTCGGCATGATCTTTGATGTATGCCTCCAACAGTAAACTGTAC 1731940 Query 19258 ATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 || || || || || ||||| || || |||||||||||||| || |||||| Sbjct 1731941 ATCTCAGAGTGTATGTTTTCGATGGCAATCTGAAATCCGTAGAATGCTCTTGC 1731993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562094817543600