Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq1990 475 1e-129 >seq1990 Length=122890 Score = 475 bits (526), Expect = 1e-129 Identities = 707/991 (71%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || || || |||||||| || ||||| ||||| || || | ||||||||||| || | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 25862 ATGATACCCTGCT-TACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| || | || || | | || ||| | ||| ||||| |||| ||||| ||||| | Sbjct 54172 ATGATTCC-TACTCTATTAACTGCAACTTC-TGTATTTATTATTGCTTTCATTGCAGCTC 54115 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | ||||||||||| ||||| || |||||||| ||||| || || | | |||||||||| Sbjct 54114 CTCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACA 54055 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 | || || || | || || |||| | ||| || ||||| | || || ||||| | Sbjct 54054 ACATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAA 53995 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 | |||||||||| | | || || ||||| ||||| || || || || | | || Sbjct 53994 TTTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCG 53935 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCA-GC-ATATGCAGGGAGACAGTGGGAACTATCTTA 26157 | | ||||||||| | || ||||| || | ||| || | |||||||||| || Sbjct 53934 TTCTTCACTTCTTACTTGGTGTAGCTTGCTACATG--GGTCGTGAGTGGGAACTTAGCTA 53877 Query 26158 CAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCT 26217 | | |||| ||| | || ||||| |||||||||| |||| || | | || ||| Sbjct 53876 CCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTAC 53817 Query 26218 CGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGG 26277 || || ||||| | || || | || ||||| || || ||| || |||||| | || Sbjct 53816 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGG 53757 Query 26278 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCA 26337 |||||||||||||| ||||| ||| | || |||||||| ||||| || || || ||||| Sbjct 53756 AATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCA 53697 Query 26338 CCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCA 26397 ||||||||| ||| |||||| ||||| || |||||||| |||| ||| ||||||||| Sbjct 53696 CCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCA 53637 Query 26398 CGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTA 26457 || || || ||||| | || ||||| || ||| | | || || Sbjct 53636 TGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGC 53577 Query 26458 TGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 26517 || || |||||||| ||||| ||||| || || || || || ||||| ||||| ||||| Sbjct 53576 AGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTT 53517 Query 26518 TGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCT 26577 ||| ||||||||||| || || || || ||||| ||| |||||| | || ||||| | Sbjct 53516 TGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTT 53457 Query 26578 TGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATT 26637 ||| ||||||| || || || || ||| | || | | |||||| |||| ||||| || Sbjct 53456 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTT 53397 Query 26638 TAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGA-TGTTAATGGAAAGATAATAC 26696 ||| |||| ||||| ||||| ||||| || || || || || || | | || || Sbjct 53396 CAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAA 53337 Query 26697 CTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTA 26756 | || |||||||| | | ||||| |||||||| || | ||||||||||| || |||| Sbjct 53336 C-ACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 53278 Query 26757 ATGCTCATAACTTTCCACTTGACTTAGCATC 26787 | ||||| ||||| || || |||||||| || Sbjct 53277 ACGCTCACAACTTCCCTCTAGACTTAGCTTC 53247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146722932671760