Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq1990 578 1e-160 >seq1990 Length=122890 Score = 578 bits (640), Expect = 1e-160 Identities = 726/995 (73%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| ||| |||| ||| || ||||||||||| |||||||| ||||||||||||||||| Sbjct 53241 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 53300 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || |||||||| | |||||||||||||| | || | || | ||| Sbjct 53301 CCAAGGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTAATAACACGACCTTGACTGTCA 53360 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || || |||||||| || ||||| | || |||||||||||| || || | Sbjct 53361 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAAAGCCATAGTGCTGATACCTAAT 53420 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 || || | ||| || | || ||||||||||| | |||||| |||||| || Sbjct 53421 GCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAG 53480 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || ||||||||||| || ||||| || | ||| |||||||| || ||||| || || ||| Sbjct 53481 TTGTTAAAGCTAGCGTATTGGAAAATTAATCTACCAAAGTAACCGTGAGCAGCTACGATG 53540 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 || || || ||||| ||||| || || || || || ||| ||| ||| | |||| Sbjct 53541 TTGTAAGTTTCTTCCTCTTGACCAAACTTGTAACCTGCGTTAGCAGACTCATTCTCAGTA 53600 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 |||||||| || | ||||| || | || ||||||||| ||||| || ||| Sbjct 53601 GTTTCACGGATTAAACTTGAAGTTACTAAGGAACCATGCATAGCACTGAATAGAGAGCCA 53660 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443 |||||||| || || ||||| ||||| ||||| || ||||||||||| |||||||| || Sbjct 53661 CCGAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 53720 Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503 || || |||| ||| || |||||||| || || || || | ||||||||| |||||||| Sbjct 53721 TGGAACACAATCATGAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCGTCAGAGAAG 53780 Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 36563 || ||||| |||| ||||||| ||||| |||||| || || |||||||| |||||| Sbjct 53781 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAA 53840 Query 36564 TAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 36623 || || ||| ||||| || | |||||||| | || ||||||||||| | || ||| Sbjct 53841 TATGCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCC 53900 Query 36624 A---AGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 36680 | || ||||| | ||||| | ||||| | || || | | || || || ||| Sbjct 53901 ATGTAGCAAGCT---ACACCAAGTAAGAAGTGAAGAACGATTAACTCGTAAGGACCACCG 53957 Query 36681 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 36740 || || | ||| || || | || ||||||||||| |||||||||||||| | |||||| Sbjct 53958 TTGTAAAGCCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAAACCGATA 54017 Query 36741 GCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCT 36800 || || | |||| ||| || ||||||||||||||||||| || || | | || Sbjct 54018 GCTGCAGAAGTAGGGATGATAGCAGCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCA 54077 Query 36801 GAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAA 36860 || ||||||||||| |||||||| ||||| || ||||| || |||| || ||||| | | Sbjct 54078 GAAACAGGCTCACGGATACCATCAATATCTACAGGAGGAGCTGCAATGAAAGCAATAATA 54137 Query 36861 AATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAG 36920 ||| | | ||| ||||| || | ||| ||||||| || || ||||| || | || Sbjct 54138 AATACAGAAGTTGCAGTTAATAGAGTAGGAATCATTAAAACACCGAACCATCCGATGTAA 54197 Query 36921 AGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 |||||||| | || || ||||||||||| || || Sbjct 54198 AGGCGGTTTTCAGTGCTGGTAACCCAGTCGCAGAA 54232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150450844574460