Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq1990 589 7e-164 >seq1990 Length=122890 Score = 589 bits (652), Expect = 7e-164 Identities = 728/993 (73%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| ||| |||| || || |||||||||||||| || ||||| ||||| ||||||||| Sbjct 53241 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 53300 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| |||||||| | || || ||||||||| || | | ||| | |||| Sbjct 53301 CCAAGGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTAATAACACGACCTTGACTGTCA 53360 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || || || || |||||||| || ||||| | || |||||||||||| ||| || | Sbjct 53361 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAAAGCCATAGTGCTGATACCTAAT 53420 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | || | ||| || | || || ||||||| ||| | |||||| |||||| ||| Sbjct 53421 GCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAG 53480 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 |||||||||||||| || ||||| || | ||| |||||||| || ||||| || || ||| Sbjct 53481 TTGTTAAAGCTAGCGTATTGGAAAATTAATCTACCAAAGTAACCGTGAGCAGCTACGATG 53540 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 || || |||||||||||||| || || || || || ||| ||| | | |||| Sbjct 53541 TTGTAAGTTTCTTCCTCTTGACCAAACTTGTAACCTGCGTTAGCAGACTCATTCTCAGTA 53600 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 |||||||| || | ||||| || | |||||||||||| ||| | || ||| Sbjct 53601 GTTTCACGGATTAAACTTGAAGTTACTAAGGAACCATGCATAGCACTGAATAGAGAGCCA 53660 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||||||| ||||| ||||| ||||||||||| || ||||||||||| |||||||| || Sbjct 53661 CCGAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 53720 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 ||||| || | ||| ||||| |||||||||||||| || | ||||||||| ||| ||| Sbjct 53721 TGGAACACAATCATGAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCGTCAGAGAAG 53780 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGA 5784 ||||| || || | ||||| | || || || | |||| || || ||||| || ||||| Sbjct 53781 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTA-GCAGCCGCAACAGGAGCTGA 53839 Query 5785 ATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCC 5844 |||||| || ||||| || ||||| ||||| | ||| ||||||||||| | || || Sbjct 53840 ATATGCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACC 53899 Query 5845 CAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATT 5904 || ||| || | ||||| | |||||| | |||| | | ||| || || || || Sbjct 53900 CATGTAGCAAGCTACACCAAGTAAGAAGTGAAGAACGATTAACTCGTAAGGACCACCGTT 53959 Query 5905 GTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGC 5964 ||||||||||||||| | || |||||||| || || |||||||| || || || || Sbjct 53960 GTAAAGCCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAAACCGATAGC 54019 Query 5965 GTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGC 6024 || | || | | || | || |||||||||||||| || || ||||| || | Sbjct 54020 TGCAGAAGTAGGGATGATAGCAGCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGA 54079 Query 6025 GACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAA 6084 || || ||||| || || || || || || || || || || | ||| || | ||||| Sbjct 54080 AACAGGCTCACGGATACCATCAATATCTACAGGAGGAGCTGCAATGAAAGCAATAATAAA 54139 Query 6085 TGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAG 6144 | ||| |||||| ||||| || | || |||||||| ||||| ||||| || | || || Sbjct 54140 TACAGAAGTTGCAGTTAATAGAGTAGGAATCATTAAAACACCGAACCATCCGATGTAAAG 54199 Query 6145 GCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||||| | ||||| ||||||||||| ||||| Sbjct 54200 GCGGTTTTCAGTGCTGGTAACCCAGTCGCAGAA 54232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152645992699140