Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq1990 666 0.0 >seq1990 Length=122890 Score = 666 bits (738), Expect = 0.0 Identities = 747/992 (75%), Gaps = 14/992 (1%) Strand=Plus/Minus Query 162506 ACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCC 162565 ||||||| ||| ||| || ||| | || |||| ||||||||||| || ||||| | Sbjct 54225 ACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTAATGATTC 54166 Query 162566 CTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCTCCAG 162622 || || || | | ||||||| || || ||||| ||||||||||| ||||| | Sbjct 54165 CTA-CT--CTATTAACTGCAACTTCTGTATTTATTATTGCTTTCATTGCAGCTCCTCCTG 54109 Query 162623 TTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCA 162682 | ||||| ||||||||| | || |||||| | ||||| ||||| || || |||||||||| Sbjct 54108 TAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAACATCA 54049 Query 162683 TCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGG 162742 |||||| |||| || | |||| ||| ||||| ||| | |||||||| || || |||| Sbjct 54048 TCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAATTTGGG 53989 Query 162743 AAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCC 162802 |||| || | ||||||| ||| | || || ||||| |||| | | | | || | | Sbjct 53988 AAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGTTCTTC 53929 Query 162803 ACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAG 162862 ||||| | | || | | ||| |||||| ||||||||||| ||||| |||| Sbjct 53928 ACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAG 53869 Query 162863 GTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGT 162922 ||||||||||||||||| ||||||||| || || || || | || || ||||| | Sbjct 53868 GTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTTT 53809 Query 162923 TCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTG 162982 ||||| |||| || | |||||||| |||||||||| |||||| | || || |||| Sbjct 53808 TCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAATCTCTG 53749 Query 162983 GTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCC 163042 ||||||| |||| |||| | ||||||||||| || ||||||||||| |||||||| |||| Sbjct 53748 GTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCCATTCC 53689 Query 163043 ATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTC 163102 | ||| |||| || || |||||||||||||| || || || ||||||||||| ||||| Sbjct 53688 ACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGGTTCCT 53629 Query 163103 TTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATA 163162 | || ||||| | | ||| | |||||||||||| | ||||| ||| ||||| | Sbjct 53628 TAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGGTTACA 53569 Query 163163 AGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCT 163222 |||| || ||||| ||||| ||||||||||| || |||||||| || ||||||||| | | Sbjct 53568 AGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGGTAGAT 53509 Query 163223 TGATCTTCCAGTATGC-ATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 | || ||||| || || | |||| |||||||| ||||| | ||||||||| | ||||| Sbjct 53508 TAATTTTCCAATACGCTAGCTTT-AACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCT 53450 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | ||||| || | ||||||||||||||| | ||| | |||||||| |||||| | Sbjct 53449 TGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAACTTA 53390 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGAC---GCAGGTGGTAAAGTGATTCCTACT 163398 ||||||||||||||||||||||| || |||||| |||| || || ||| ||| Sbjct 53389 AACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGT---GTTATTAACACT 53333 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| || ||| | ||| | || |||||||||||||||||||| || ||||| ||| Sbjct 53332 TGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCT 53273 Query 163459 CACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 ||||||||||| || ||| | ||| ||| ||| Sbjct 53272 CACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553071042015600