Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1886 118 2e-21 seq1794 86.0 1e-11 >seq1886 Length=1372085 Score = 118 bits (130), Expect = 2e-21 Identities = 265/381 (70%), Gaps = 19/381 (5%) Strand=Plus/Plus Query 25671 GTACGTGGAGGCCA-AGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTG 25729 ||| ||| |||||| || ||| |||||| |||||||| || || || || | ||||| | Sbjct 694290 GTATGTGCAGGCCAGAGCGTT-CTACGGATTCCAGATAGCTATTGAGAACATTCACTCAG 694348 Query 25730 AGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAGAGAGATCGG-CTG 25788 | |||| | | || | ||||||||| ||| || |||| ||| | | || Sbjct 694349 AAATGTACAGTTTGTTGTTGGAGGCGTACATTAAAGATCAAGCTGAGA-AGAGCAGACTT 694407 Query 25789 TTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGG 25848 || |||||| ||| |||||| || | |||||||| ||||| | || ||| Sbjct 694408 TTCAATGCCATTGAGACCATACCTTGCGTTGCTAGGAAGGCTGACTGGGCTCTAAAATGG 694467 Query 25849 ATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGG 25906 ||| |||| | | | ||| ||| ||| | | | || || || ||| || |||| Sbjct 694468 ATCGACAGTGCTGGGAGCT----TTGCAGAGAGAATCCTGGCTTTCGCCTGC-GTCGAGG 694522 Query 25907 GCATCTT--TTTCAGCG-GTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCA 25963 | || || |||||| | ||| |||||| ||||||| ||||||||| ||| || | Sbjct 694523 GGATTTTCTTTTCAGGGAGTT--TTTGCG-CCATCTTTTGGCTCAAGAAGAGAGGTCTTA 694579 Query 25964 TGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGAT 26022 |||| ||||| ||| ||||||||||| |||||| | || ||||| || ||| | ||| Sbjct 694580 TGCCAGGGCT-TACGTTTTCCAACGAACTCATCTCACGAGATGAGGGCCTGCACTGCGAT 694638 Query 26023 TTTGCCTGCCTGCTCTACACG 26043 ||||| |||||||| |||||| Sbjct 694639 TTTGCATGCCTGCTGTACACG 694659 >seq1794 Length=856596 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 |||||| ||||| || |||||||| | | || ||||||| | || | |||||| Sbjct 303892 CATGAAAAGGTCTGGAATCCACAGACCATAGAATAGATCTCGAGCCCTATTTTCCTCCTT 303833 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 || | || ||||| ||||||| | || || || || || ||||||||||||||||| Sbjct 303832 CCCATGATTCTTCCTAAGATCCAGCCAATCGAATATATCGGCATGCCACGGCTCCAGATA 303773 Query 222160 GACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || || | |||||| | |||| ||||||||| || || Sbjct 303772 GATAGCGAAAGCGCCCTTCCTCTTGCCGCCACCCTGGTCGAC 303731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928821694985600