Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1990 657 0.0 >seq1990 Length=122890 Score = 657 bits (728), Expect = 0.0 Identities = 743/993 (75%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 || ||||| ||||| || || | || ||| | || |||| ||||| || ||| | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 8308 ATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCT 8367 ||||| || || || | | || || | || |||| || ||| |||| |||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACTTCTGTATTTATTATTGCTTTCATTGCAGCTCCT 54113 Query 8368 CCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAAC 8427 ||||| || || || || ||||| || || ||| |||| ||||| | ||||| |||||| Sbjct 54112 CCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAAC 54053 Query 8428 ATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATC 8487 |||||||||| ||| | | || | ||| || || || | ||||||||||| || Sbjct 54052 ATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAATT 53993 Query 8488 TGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTT 8547 |||||||| ||||| ||||||| ||||| |||||||||||||||||| || | | ||| Sbjct 53992 TGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGTT 53933 Query 8548 TTCCACTTCCTCCTTGGCGTCT-TTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 | |||||| | ||||| || ||||| | ||||||||||| ||||||||| ||||| Sbjct 53932 CTTCACTTCTTACTTGGTGTAGCTTGCT-ACATGGGTCGTGAGTGGGAACTTAGCTACCG 53874 Query 8607 CCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGC 8666 | || ||||||||||||||| ||||||||| || ||||||||||| |||||| |||| Sbjct 53873 TTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGC 53814 Query 8667 TGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTAT 8726 ||| ||| | |||| || |||||||||| |||||||| ||||||||| | || || Sbjct 53813 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAAT 53754 Query 8727 CTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCC 8786 ||| ||||| ||||||| ||| |||| ||||| ||||| ||||||||||| |||||||| Sbjct 53753 CTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCC 53694 Query 8787 CTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGG 8846 ||||||||||||||||| |||||||| ||||| || ||||| || || |||||||| Sbjct 53693 ATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGG 53634 Query 8847 TTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGG 8906 ||| | || ||||| | | ||||| || || || | |||||| ||| || Sbjct 53633 TTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGG 53574 Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966 |||||||| |||||||| || |||||||||||||| || || ||||| || |||||||| Sbjct 53573 TTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGG 53514 Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026 | | || || |||||||| || |||||||| ||| | || || |||||| | || Sbjct 53513 TAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGC 53454 Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086 ||| |||||||| || || |||||||| || || | || || || ||||||||||| Sbjct 53453 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAA 53394 Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146 | | || || |||||||||||||| || || | ||| | ||||| || || | ||||| Sbjct 53393 CTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAACAC 53334 Query 9147 CTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGC 9206 ||||| ||| | | ||||| || || ||||||||||| ||||| ||| | ||||| Sbjct 53333 TTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGC 53274 Query 9207 ACACAACTTCCCGCTTGACCTTGCGGCTGCTGA 9239 ||||||||||| || ||| | || ||| ||| Sbjct 53273 TCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 565 bits (626), Expect = 3e-156 Identities = 717/986 (73%), Gaps = 0/986 (0%) Strand=Plus/Minus Query 9827 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTT 9886 ||||||||||| | | |||| || ||||| ||||| ||||||||||| ||| | |||||| Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 9887 CCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGG 9946 || |||||| || | | ||||| ||| |||| || || || ||||| || ||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 9947 TACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTC 10006 || ||||| ||| | || || ||| | || ||| |||||| || || || ||||| Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 10007 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 10066 || || |||||| || | | | ||||| | | ||| | |||||||| || | || Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 10067 GGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 10126 ||||||||| || ||| || | || || || ||| |||| || || || || ||| Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 10127 GCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATC 10186 || || |||||||| ||||||||||| ||||| |||||||| || |||| | | | Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGATCCGTACAATTA 44093 Query 10187 CGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTC 10246 || ||||| || || || || |||||||| || |||||||||||||| ||| || | Sbjct 44092 CGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTTTTA 44033 Query 10247 ATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATT 10306 || || ||||| || || || ||||||| ||||| || ||||| || || || || ||| Sbjct 44032 ATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGCAATT 43973 Query 10307 TTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATG 10366 ||||| ||| || | ||| |||| || || ||||| ||||| | || || || |||||| Sbjct 43972 TTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCATATG 43913 Query 10367 ATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTA 10426 |||||||||||||| | |||||| || || ||| || || || || | |||||| Sbjct 43912 ATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAACTGTA 43853 Query 10427 GAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACT 10486 ||||| || | | | ||||||| || ||||| || ||| || ||| | ||| Sbjct 43852 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACT 43793 Query 10487 CAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGA 10546 ||| ||||| || ||||| |||||||| ||||||||||||||||| || || || || Sbjct 43792 CAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTTCGGT 43733 Query 10547 ATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGT 10606 |||| ||| || ||||| ||| | |||||||||||||| |||||||| || | ||| Sbjct 43732 GTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAACTGGT 43673 Query 10607 CTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTT 10666 | |||| | |||||||| | ||||| | ||| | ||| | || ||||| |||||| Sbjct 43672 TTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGATTTT 43613 Query 10667 GTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAAT 10726 || ||||| || || | || | ||||| ||||||||||| || || || || || ||| Sbjct 43612 GTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAAAAAT 43553 Query 10727 ATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAGC 10786 || ||||| || |||||| ||||||| ||||||||| | || || || || |||| Sbjct 43552 ATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGAAAAT 43493 Query 10787 TTTGTTTTCCCAGAAGAAGTTCTTCC 10812 |||| |||||||| || ||||| || Sbjct 43492 CTTGTATTCCCAGAGGAGGTTCTACC 43467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516467152560000