Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1943 122 7e-23 >seq1943 Length=2190071 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || || ||||| || || || || ||| |||| ||| Sbjct 1470072 ATGCAAATATTTGTTAAGACGTTGACGGGGAAGACTATCACATTAGAAGTGGAAAGTTCT 1470131 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || || |||||||| ||| | ||| ||||| Sbjct 1470132 GACACCATCGACAACGTGAAGACTAAGATTCAGGACAAAGAAGGAATTCCCCCGGATCAG 1470191 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||||||||| ||||| ||| |||||||| | ||| |||| ||||| ||| Sbjct 1470192 CAGAGACTTATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACTTTGGCTGATTACAAC 1470251 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || || || |||||| |||| | | || |||||||||| Sbjct 1470252 ATTCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGAGGAGGGAT 1470301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425394482604210