Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1691 178 8e-39 seq1943 105 4e-17 seq1917 102 5e-16 seq1898 102 5e-16 seq1950 98.7 6e-15 seq1762 96.9 2e-14 seq1892 95.1 8e-14 seq1538 91.5 1e-12 seq1987 86.0 4e-11 >seq1691 Length=539818 Score = 178 bits (196), Expect = 8e-39 Identities = 378/555 (68%), Gaps = 17/555 (3%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 || || |||||||| ||||| || ||||||||||| | || |||||| ||| | || Sbjct 231780 ATCGGGATTGATTTGGGAACGACGTACAGTTGTGTTGGAGTGTGGCAACATGATCGGGTG 231839 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || ||||| ||||| ||||| || | || ||||| ||||||||| | |||||||| Sbjct 231840 GAGATCATTGCTAATGATCAAGGAAACCGCACCACACCGTCATATGTTGCGTTTACTGAC 231899 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | | |||||||| || ||||| |||||| || || || ||||| Sbjct 231900 ACGGAGCGGTTGATTGGAGACGCAGCTAAGAATCAAGTCGCTATGAACCCGACGAATACC 231959 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || ||||| || | |||||||| | || |||||| |||| || |||| Sbjct 231960 GTGTTCGATGCGAAGCGGTTGATTGGGAGGCGATTCGATGATGTGTCTGTACAGAGTGAT 232019 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGG---TGG---TAAACCATATATAGAA 474625 ||| ||||| ||||| ||||| || || || ||| || | |||| Sbjct 232020 ATGAAGTTGTGGCCGTTTAAAGTGAT---TGCCGGGCCAGGGAATAAGCCTTTCATAGTT 232076 Query 474626 GCAA--TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | |||| | || || || || |||||| | | ||| |||| || || ||||| | Sbjct 232077 GTGACTTACAAG--GGAGAGACGAAGCAATTTGCTGCTGAAGAAATCTCATCCATGGTGT 232134 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGT 474741 | ||| |||||| | || || | | |||||| |||| || | |||| || Sbjct 232135 TGATCAAGATGAAAGAGGTTGCAGAAGT-GTTCCTTGGA-AAGACTGTGAAGAATGCTGT 232192 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || || ||||| ||||||||||||||||| | |||||||| || ||||| || Sbjct 232193 CATCACAGTGCCAGCCTATTTTAATGATTCTCAGAGGCAAGCAACGAAGGATGCAGGTGC 232252 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||||| ||| | || ||| || || || || || || || || || ||| ||||||| Sbjct 232253 TATTGCTGGTTTAAACGTTCAGCGCATCATCAACGAGCCTACGGCTGCTGCAATTGCTTA 232312 Query 474862 TGGTCTTGATAAGAA 474876 ||| | |||||||| Sbjct 232313 TGGCTTGGATAAGAA 232327 >seq1943 Length=2190071 Score = 105 bits (116), Expect = 4e-17 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||||||||| ||||| | |||||| || || || || ||||| || | ||||| Sbjct 1470934 TTATAATCAGCAAGAGTACGACCATCTTCCAGCTGTTTGCCCGCAAAGATCAACCGTTGC 1470875 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || |||||||| |||||||| || || ||||| || ||| |||||||||||| Sbjct 1470874 TGGTCGGGAGGAATACCTTCCTTATCCTGGATCTTAGTCTTAACATTATCAATAGTATCA 1470815 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| || || ||||| || || |||||||| || ||||| || Sbjct 1470814 GAGCTCTCAA-CCTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTTACAAAAATCTG 1470759 Score = 104 bits (114), Expect = 2e-16 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 480557 ACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTT 480616 |||||| |||||||| | ||| || || || || || || || ||||| | Sbjct 1470515 ACGGAGGACAAGATGTAATGTGGACTCCTTCTGAATGTTGTAGTCTGCAAGAGTACGACC 1470456 Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || | |||||||| ||||| || || ||||| |||||||| ||||| |||||||| Sbjct 1470455 ATCCTCTAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCAGGTGGAATACCTTCCTT 1470396 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 |||||||||||| ||||| || || ||||||| | | | | ||| |||| Sbjct 1470395 GTCTTGAATCTTGGTCTTGACGTTATCTATGGTATCAGAACTCTCCACCTCCAA-TGTAA 1470337 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || ||||| ||||| ||||| Sbjct 1470336 TAGTCTTTCCCGTAAGCGTCTTCACGAATATTTG 1470303 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| || ||||| | ||| || | |||||||| |||||||| | ||||| Sbjct 1470022 TTGTAATCGGCCAGAGTACGCCCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGC 1469963 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||| ||||| ||||| |||||||||||||| || || ||||||||||| Sbjct 1469962 TGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTCGTCTTAACGTTATCAATAGTATCT 1469903 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || || ||| ||||| || || || || || || || ||||| ||||| Sbjct 1469902 GAGCTCTCAACTTCCAA-CGTAATCGTCTTCCCCGTCAGCGTTTTGACGAATATTTG 1469847 >seq1917 Length=1730829 Score = 102 bits (112), Expect = 5e-16 Identities = 131/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| |||||||| || || | | |||||| | |||||| |||||||| || | ||| || Sbjct 508309 ATTGTAATCAGCAAGGGTGCGGCCATCTTCTAATTGCTTACCAGCAAAGATCAAACGCTG 508250 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT-TTGACAGCTTCAATAGTAT 480711 ||||| || ||||| |||||||||||||| || ||| || || || ||||| || | Sbjct 508249 CTGATCGGGCGGAATCCCTTCCTTGTCTTGGAT-TTTCGTCTTCACGTTGTCAATTGTGT 508191 Query 480712 CAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| | | ||||| || || ||||||||||| | || ||||| || ||||| Sbjct 508190 CAGAGCTTTCGACCTCAAGCGTGATTGTTTTACCGGTCAAGGTTTTAACAAAGATTTG 508133 >seq1898 Length=1509708 Score = 102 bits (112), Expect = 5e-16 Identities = 258/387 (67%), Gaps = 14/387 (4%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 || || ||||| || ||||| ||||| || || || ||||| || ||| | ||| Sbjct 689671 AACCCCGATGAGGCGGTTGCTTATGGGGCAGCGGTTCAAGCTGCAATTCTGAGCGGT--- 689727 Query 475853 TCAGACGAGAAACTAAA---TAATATTGTACT--TGTTG-ACGTAACTCCACTTTCATTA 475906 || | ||| | ||| | | | |||| ||||| | || ||||| ||| | Sbjct 689728 ---GAGGGGAATCAAAAGGTTCAAGATCTACTGCTGTTGGATGTTACTCCTCTTAGCCTC 689784 Query 475907 GGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA-TCCC 475965 ||||||||||| | || || | ||||| | ||||||| || || || | | |||| Sbjct 689785 GGTCTTGAAACCGCCGGTGGTGTCATGACAACTCTTATTCCAAGGAACACGACAATTCCC 689844 Query 475966 ATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCA 476025 | | || ||| |||| || || || || |||||||||| || ||| ||||| Sbjct 689845 ACG-AAGAAAGAGCAAGTGTTCTCTACCTACGCTGATAATCAGCCAGGTGTTCTTATCCA 689903 Query 476026 AATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCT 476085 ||||||| || || || | || | ||| || || | | || | ||| | || Sbjct 689904 GGTCTTTGAGGGAGAGAGGGCAAGAACAAGAGACAACAATCTATTGGGGAAATTTGAGCT 689963 Query 476086 TGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGA 476145 || || ||||| |||||||| |||| || || || ||| | ||| || |||||||| Sbjct 689964 TGCTGGCATTCCACCTGCTCCTCGAGGTGTGCCGCAGATTAACGTTTGCTTCGATATTGA 690023 Query 476146 TGCAAATGGTATTCTTAATGTTACTGC 476172 ||| |||||||| |||||||| |||| Sbjct 690024 TGCTAATGGTATCCTTAATGTGTCTGC 690050 >seq1950 Length=2340674 Score = 98.7 bits (108), Expect = 6e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || || || || | || |||||||||||||| || | || |||||| ||| | Sbjct 467197 TGCCATCGGCATCGACCTTGGTACTACTTACAGTTGCGTCGGAGTGTGGCAACATGATCG 467138 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || || |||||||| ||||| ||||| ||||| || || ||||| |||| || Sbjct 467137 TGTCGAGATCATTGCCAACGACCAGGGTAACAGAACCACCCCGAGCTATGTGGCTTTCAC 467078 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486 ||| |||| | ||| || || ||||||||||| |||| Sbjct 467077 TGACTCTGAGCGTCTCATCGGTGATGCTGCTAAGAATCA 467039 Score = 89.7 bits (98), Expect = 3e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 || ||||||||||| ||||| |||||||| |||||| | || || ||||| |||||||| Sbjct 456703 GACTTTTCATCTCCGAATATCGCAAAGGAGATGCATGTCGGTCATTTGAGGTCTACAATC 456762 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 || || || |||||| | || | || | ||||| |||||| ||| ||| Sbjct 456763 ATAGGCGACAGCCTTTGTCGGATGTTGGAGTACTGTGGCGTGGAAGTATTGCGAAGGAAT 456822 Query 817220 CATATTGGTGATTGGGGAACACAATTTGG 817248 || | |||||||||||||| || |||| Sbjct 456823 CACGTCGGTGATTGGGGAACTCAGGTTGG 456851 >seq1762 Length=742324 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || |||||||| ||||| | ||| || || ||||| || ||||| || ||||| || Sbjct 519605 TTGTAATCAGCAAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGC 519546 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||||||||| ||||||||||| || ||||| || ||| ||||| || || Sbjct 519545 TGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTAGTCTTCACATTATCAATGGTGTCC 519486 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | | || || || ||||| || ||||| |||||||| || || ||||| Sbjct 519485 GAGCTCTCGA-CCTCCAGAGTGATAGTCTTTCCGGTCAGAGTCTTGACAAAGATTTG 519430 Score = 86.0 bits (94), Expect = 4e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 |||||||||||| | ||| | ||||| |||||||| || ||||||||||| | || Sbjct 519150 ATTATAATCAGCCAAAGTACGACCGTCTTCCAGTTGCTTACCTGCAAAAATAAGCCTCTG 519091 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 || || ||||| || || |||||||| || |||||| || ||| ||||||||||| Sbjct 519090 CTGGTCGGGAGGGATGCCCTCCTTGTCCTGTATCTTTGTCTTTACATTATCAATAGTATC 519031 >seq1892 Length=1436924 Score = 95.1 bits (104), Expect = 8e-14 Identities = 137/192 (71%), Gaps = 10/192 (5%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || || || || ||||| || || | ||||||||||| |||| Sbjct 1327270 ATGCCGTGGTGACTGTGCCTGCTTACTTCAATGACTCGCAGAGACAAGCAACTAAGGATG 1327329 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||| | || ||| | ||||| || ||||| || || || || ||| Sbjct 1327330 CCGGAGTCATTGCCGGTTTGAACGTTCTTCGTATCATCAATGAGCCTACCGCTGCTGCAA 1327389 Query 474855 TTGCTTATGGTCTTGATAAGAA------TTCTG--ACAAAGAAGTAAATGTTTTAATCTT 474906 ||||||| || | |||||||| ||||| | ||||| ||||| |||||||| Sbjct 1327390 TTGCTTACGGATTGGATAAGAAGGCAACTTCTGTAGGAGAGAAG--AATGTATTAATCTT 1327447 Query 474907 TGATTGTGGAGG 474918 ||| ||||| Sbjct 1327448 CGATCTAGGAGG 1327459 >seq1538 Length=191664 Score = 91.5 bits (100), Expect = 1e-12 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 318643 ATACCATTATCACCATAAACACATTGAATCAATTTATCATTAGCATTTCTTACAGTACCA 318702 || |||| || ||||| | | ||||||||| | || || ||| | || || ||| Sbjct 171100 ATTCCATCCTCTCCATAGAGAAATTGAATCACATCTCCAAGAGAATTACGGACTGTCCCA 171041 Query 318703 TCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCTTTGTACATAACCTGTG 318762 ||||| | ||| | | ||| || | ||| || | | ||||| | ||||| || Sbjct 171040 TCATACTTCACCATGACATCCTCCATAGCTTTCACCAGTCGCCTTTGGATGTAACCGGTC 170981 Query 318763 TCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAAAAG 318822 || | |||||| | ||| |||| ||| | ||||||||||||| ||||| | ||||||||| Sbjct 170980 TCCGAAGTTTTTACAGCTGTATCAATGAGACCTTCTCTTCCTCCCATAGCATGGAAAAAG 170921 Query 318823 AATTC 318827 ||||| Sbjct 170920 AATTC 170916 >seq1987 Length=4973254 Score = 86.0 bits (94), Expect = 4e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| | ||||| || || || ||||||||||| ||| | || ||||| || ||||| Sbjct 1084264 GCAGTGGTGACTGTCCCTGCTTACTTTAATGATTCGCAAAGACAGGCAACCAAGGATGCC 1084205 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || ||||| ||| | || || || |||||||| || |||||||| || || || | Sbjct 1084204 GGGGTGATTGCCGGTTTGAACGTGTTGCGTATTATCAACGAACCAACCGCTGCTGCCATC 1084145 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || || ||| | || ||||| Sbjct 1084144 GCCTACGGTTTGGACAAGAA 1084125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268093839244520