Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1990 740 0.0 seq1942 95.1 1e-14 >seq1990 Length=122890 Score = 740 bits (820), Expect = 0.0 Identities = 763/989 (77%), Gaps = 8/989 (1%) Strand=Plus/Minus Query 160883 ACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTC 160942 ||||||| |||||||| || ||||||||||| | || |||||||| || | ||||||| Sbjct 54225 ACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTAATGATTC 54166 Query 160943 CCTGCT-TGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTGT 161000 | | || | | |||| || | ||| || || ||||| ||| ||| ||||| ||||| Sbjct 54165 C-TACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCCTCCTGT 54108 Query 161001 GGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCAT 161060 || || || || || ||||| || || ||||||| || | || |||||||||||||| Sbjct 54107 AGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAACATCAT 54048 Query 161061 CTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGA 161120 ||||| |||| | |||||| ||||| ||||||||| ||||||||||||| || ||||| Sbjct 54047 CTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAATTTGGGA 53988 Query 161121 AGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCA 161180 ||| || | || |||||||| |||||||||||||||| | | | | || | || Sbjct 53987 AGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGTTCTTCA 53928 Query 161181 CTTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTG 161238 |||| | |||| | || |||| ||||||||||||||||||||||| |||||| | Sbjct 53927 CTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTA 53870 Query 161239 GGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTG 161298 || |||||||||||||| || ||||| || |||||||| || || || | ||| || Sbjct 53869 GGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 53810 Query 161299 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCT 161358 ||| || |||| || | |||||||| |||||||| | |||||| | || |||||| Sbjct 53809 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAATCTCT 53750 Query 161359 GGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTC 161418 ||||| ||||||| |||| |||| |||||||| || |||||||| || |||||||| ||| Sbjct 53749 GGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCCATTC 53690 Query 161419 CATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCG 161478 || ||||| || ||||| ||||| || || || ||||| |||||||| ||||| ||||| Sbjct 53689 CACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGGTTCC 53630 Query 161479 CTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTAC 161538 | || || || | | |||||||| || || || ||||| ||| |||||| Sbjct 53629 TTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGGTTAC 53570 Query 161539 AAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGT 161598 ||||| |||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||| | Sbjct 53569 AAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGGTAGA 53510 Query 161599 CTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCT 161658 | ||||||||||||||| ||| |||||||| || || | ||||||||| | |||||| Sbjct 53509 TTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCT 53450 Query 161659 TGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTG 161718 |||||||| || || ||||||||||||||| | || | ||||| ||||| |||||| | Sbjct 53449 TGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAACTTA 53390 Query 161719 AATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGG 161778 || ||||||||||||||||| ||| | ||||| ||||| ||| ||||| ||||| ||| Sbjct 53389 AACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAACACTTGG 53330 Query 161779 GCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCAC 161838 || ||| | ||||||||||| ||||| |||||||| ||||| || || || |||||| Sbjct 53329 GCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 53270 Query 161839 AACTTCCCTCTTGACCTTGCTGCTGCTGA 161867 ||||||||||| ||| | ||| ||| ||| Sbjct 53269 AACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 571 bits (632), Expect = 6e-158 Identities = 730/1005 (73%), Gaps = 8/1005 (1%) Strand=Plus/Minus Query 162129 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 162188 || |||||||| | |||||||||||| || ||||| || |||||||| || | |||||| Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 162189 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 162248 || |||||| || || | || || ||| |||| || || ||||| || || ||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 162249 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTT 162308 |||||||| ||| | || || || ||| | || ||| || ||||| ||||| || ||| Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 162309 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAA 162368 |||||||| || | | | | ||||| | | || |||||||||| || | ||| Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 162369 GGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGA 162428 || || |||| || ||||| ||| | || || || |||||||| || || || || ||| Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 162429 GCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTA-- 162486 || ||||| | ||||| || ||| | ||||| ||||| || || || || ||| Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGA----TCCGTACA 44097 Query 162487 --TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTT 162544 | |||||||| || || |||||||| || || || |||||||| || ||| ||| || Sbjct 44096 ATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATT 44037 Query 162545 TCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGC 162604 | | || || || | || ||||| ||||| || ||||| || || || ||||| Sbjct 44036 TTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGC 43977 Query 162605 AATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCA 162664 ||| ||||||||| | | ||| ||||||| |||||||||||||| |||| || ||||| Sbjct 43976 AATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCA 43917 Query 162665 CATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGAC 162724 |||||||| || || || || | || | ||| | | | |||||||||||| | || Sbjct 43916 TATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAAC 43857 Query 162725 AGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTC 162784 || |||||||| | | |||||||| || ||||| || || || ||| || | Sbjct 43856 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCC 43797 Query 162785 CACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTT 162844 || || |||||||| ||||| |||||||| || ||||| |||||||| || || || Sbjct 43796 AACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTT 43737 Query 162845 CGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCAT 162904 |||| |||| ||| |||||| ||||||||||||||||||||||| ||||| || || | Sbjct 43736 CGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAAC 43677 Query 162905 GGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGA 162964 ||| | |||| ||| |||| || | |||| | ||| | ||| | || ||||| || Sbjct 43676 TGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGA 43617 Query 162965 CTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAA 163024 ||||| ||||| ||| ||||||| || ||||||||||| ||||| || || || || || Sbjct 43616 TTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAA 43557 Query 163025 GAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGA 163084 || |||||||| |||||||| |||| || ||| | ||| | || || |||||||| Sbjct 43556 AAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 43497 Query 163085 GAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 || |||| ||||| || ||||| | ||| | || |||||||| Sbjct 43496 AAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||| ||||||||||| ||| |||||| ||| | ||||| ||||||||| Sbjct 16080 GGGATGTAGCGCAGTTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCGCGGGTTCGAAT 16139 Query 157751 CCTGTCACCCCGAC 157764 ||||||| ||| || Sbjct 16140 CCTGTCATCCCTAC 16153 >seq1942 Length=2165708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 158340 GTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGG 158399 ||||||| | || || || ||||| ||||| || || || ||||||||||| || || Sbjct 1167334 GTACATCTTGGATGCCGCGGAGGAGGCGGGAGTGGACCTTCCGTACTCGTGCCGAGCCGG 1167275 Query 158400 CGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTC 158459 || || ||| |||| ||||| || || ||||| || ||||| ||| ||| Sbjct 1167274 TGCGTGCTCGACGTGCGCGGGGCAAATCAAGGAGGGCACGGTGGACCAGTCGGACGGGTC 1167215 Query 158460 CTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTAC 158519 ||||||||||| || ||||| || || ||| | ||||| || || | || || || Sbjct 1167214 ATTCCTGGACGACGAGCAAATGGAGAAGGGGTTCGTGCTGACGTGCGTGGCGTACCCGAC 1167155 Query 158520 AAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTG 158559 || ||||| |||||| ||||||| ||||| ||| Sbjct 1167154 GTCGGACCTGGTGATCGAGACTCACAAGGAGGAGGACCTG 1167115 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 158340 GTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGG 158399 ||||||| | || || || ||||| ||||| || || || ||||||||||| || || Sbjct 1174919 GTACATCTTGGATGCCGCGGAGGAGGCGGGAGTGGACCTTCCGTACTCGTGCCGAGCCGG 1174860 Query 158400 CGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTC 158459 || || ||| |||| ||||| || || ||||| || ||||| ||| ||| Sbjct 1174859 TGCGTGCTCGACGTGCGCGGGGCAAATCAAGGAGGGCACGGTGGACCAGTCGGACGGGTC 1174800 Query 158460 CTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTAC 158519 ||||||||||| || ||||| || || ||| | ||||| || || | || || || Sbjct 1174799 ATTCCTGGACGACGAGCAAATGGAGAAGGGGTTCGTGCTGACGTGCGTGGCGTACCCGAC 1174740 Query 158520 AAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTG 158559 || ||||| |||||| ||||||| ||||| ||| Sbjct 1174739 GTCGGACCTGGTGATCGAGACTCACAAGGAGGAGGACCTG 1174700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547733574788400