Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq1990 563 3e-156 >seq1990 Length=122890 Score = 563 bits (624), Expect = 3e-156 Identities = 723/989 (73%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 |||||||| ||||| |||||||| ||||| ||||| || ||||||||||| | |||||| Sbjct 53247 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAAGG 53306 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAAT 17950 ||||| | ||||| | ||||||||| || | || | ||| | ||| | |||| Sbjct 53307 TTAGCACGGTTGATGATGTCAGCCCAAGTGTTAATAACACGACCTTGA-CTGTCAACAAC 53365 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||||||||| || || | || |||||||||||| ||| || | | || Sbjct 53366 AGATTGGTTGAAGTTGAAACCGTTTAAGTTGAAAGCCATAGTGCTGATACCTAATGCAGT 53425 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||| |||||||| |||| | | ||||| Sbjct 53426 GAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTT 53485 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 ||||||||| || ||||| || | ||| |||||||| || ||||| || || || || || Sbjct 53486 AAAGCTAGCGTATTGGAAAATTAATCTACCAAAGTAACCGTGAGCAGCTACGATGTTGTA 53545 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| ||||| || || || ||| ||||||| |||||| ||||| Sbjct 53546 AGTTTCTTCCTCTTGACCAAACTTGTAACCTGCGTTAGCAGACTCATTCTCAGTAGTTTC 53605 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 | || | ||||| || | || ||||||||| ||||| || |||||||| Sbjct 53606 ACGGATTAAACTTGAAGTTACTAAGGAACCATGCATAGCACTGAATAGAGAGCCACCGAA 53665 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || ||||| ||||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 53666 TACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAA 53725 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 || | |||||| ||||||||||| || || | ||||||||| |||||||| || || Sbjct 53726 CACAATCATGAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCGTCAGAGAAGCTTCC 53785 Query 18371 TTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| |||| || || | | ||||| || | || || |||| || || || || ||||| Sbjct 53786 TTGACCAATTGGGTAGATCAAGAAA-ACAGCAGTAG-CAGCCGCAACAGGAGCTGAATAT 53843 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| ||||| || |||||||||| | || ||||||||||| | || |||||| Sbjct 53844 GCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCCATG 53903 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 || || | || | | ||||| | || || | | || || || ||||| || Sbjct 53904 TAGCAAGCTACACCAAGTAAGAAGTGAAGAACGATTAACTCGTAAGGACCACCGTTGTAA 53963 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 | ||| || || | || ||||||||||| |||||||||||||| | |||||| || | Sbjct 53964 AGCCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAAACCGATAGCTGCA 54023 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | |||| ||| || | || |||||||||||||| || || | | || || ||| Sbjct 54024 GAAGTAGGGATGATAGCAGCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGAAACA 54083 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 |||||||| |||||||| || || || |||||||| |||| || ||||| | |||| | Sbjct 54084 GGCTCACGGATACCATCAATATCTACAGGAGGAGCTGCAATGAAAGCAATAATAAATACA 54143 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || ||| ||||| || | ||| ||||| | || || ||||| || | ||| |||||| Sbjct 54144 GAAGTTGCAGTTAATAGAGTAGGAATCATTAAAACACCGAACCATCCGATGTAAAGGCGG 54203 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | || || ||||||||||| || || Sbjct 54204 TTTTCAGTGCTGGTAACCCAGTCGCAGAA 54232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151314824157060