Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1990 636 2e-177 >seq1990 Length=122890 Score = 636 bits (704), Expect = 2e-177 Identities = 741/1001 (74%), Gaps = 8/1001 (1%) Strand=Plus/Plus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||| ||| | ||| || |||||||||||||||||||| || ||||| ||||||||||| | Sbjct 53245 CAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAA 53304 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 | ||| ||||||| | ||| ||||| ||||| | |||||||| |||| |||| | Sbjct 53305 GGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTAATAACACGACCTTGACTGTCAACAA 53364 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 || |||||||||||||| ||||| | |||||| ||||| ||||| | ||| | ||| | Sbjct 53365 CAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAAAGCCATAGTGCTGATACCTAATGCAG 53424 Query 103350 TGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGT 103409 ||||||||||||| ||||| || | ||||||| Sbjct 53425 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGT 53484 Query 103410 TGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGT 103469 | || ||||||||||| || || | ||| |||||||| ||||| ||||||||||||| Sbjct 53485 TAAAGCTAGCGTATTGGAAAATTAATCTACCAAAGTAACCGTGAGCAGCTACGATGTTGT 53544 Query 103470 ATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCT 103529 | || ||||||||||| || ||||||||||| ||| ||| ||| | ||||| || | Sbjct 53545 AAGTTTCTTCCTCTTGACCAAACTTGTAACCTGCGTTAGCAGACTCATTCTCAGTAGTTT 53604 Query 103530 CACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 |||| | | || || || | ||||| |||||||||||||| || || ||||||| Sbjct 53605 CACGGATTAAACTTGAAGTTACTAAGGAACCATGCATAGCACTGAATAGAGAGCCACCGA 53664 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| || || ||||||||||| |||||||| || ||||| ||||| ||||||| Sbjct 53665 ATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCTTGGA 53724 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 | || | |||| ||||||| || || || || || ||||||||| | || ||||| | Sbjct 53725 ACACAATCATGAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCGTCAGAGAAGCTTC 53784 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 ||||||||| ||||||| |||||| || || | ||||||||||||||||| || |||| Sbjct 53785 CTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATATG 53844 Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATAT 103829 | ||| |||||| || ||||| || | ||||||| | |||||||||||| ||||| | Sbjct 53845 CAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCCATGT 53904 Query 103830 ATGCATAG--ATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATA 103887 | ||| || | |||| | |||||| | || | | | | ||||||||||||| || Sbjct 53905 A-GCA-AGCTACACCAAGTAAGAAGTGAAGAACGATTAACTCGTAAGGACCACCGTTGTA 53962 Query 103888 CAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGC-GT 103946 ||||| ||||||| || || ||||||||||| || |||||||| | ||| || || | Sbjct 53963 AAGCCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAAACCGATAGCTGC 54022 Query 103947 TGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGA 104006 | || |||| | | ||| |||||||||||||||| ||||| | || ||||||| | Sbjct 54023 AGAAGTAGGG-ATGATAGCAGCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGAAA 54081 Query 104007 CGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-G 104065 | || ||||| || || || ||||| || ||||| ||||| | |||||||| || || Sbjct 54082 CAGGCTCACGGATACCATCAATATCTACAGGAGGAGCTGCAATGAAAGCAATAATAAATA 54141 Query 104066 CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGA 104125 |||| ||||| | || ||||| || ||||| | ||||||||||| || | || || Sbjct 54142 CAGA-AGTTGCAGTTAATAGAGTAGGAATCATTAAAACACCGAACCATCCGATGTAAAGG 54200 Query 104126 CGGTTGTTTGTCGATGTAACCCACTCGCAGAAGTTATCCCA 104166 ||||| | || |||||||| ||||||||| | |||| Sbjct 54201 CGGTTTTCAGTGCTGGTAACCCAGTCGCAGAAGCGACCCCA 54241 Score = 553 bits (612), Expect = 2e-152 Identities = 727/1006 (72%), Gaps = 6/1006 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| || || ||||||| |||||||| || ||||| Sbjct 43452 AGAGCGTTTCCACGTGGTAGAACCTCCTCTGGGAATACAAGATTTTCATGAGGCTGATCT 43511 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||||| ||| ||||| | ||||||||| | || || || || ||||| || || Sbjct 43512 TGAGCTGCCATCCAAGCACGAATACCTTCATTTAGAAGAATATTTTTAGTGTAAAAAGTT 43571 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || || ||||| ||||| | || || || || ||||| |||||||| || | Sbjct 43572 TCAAATTCAGGGTCTTCAGCTGCACGAATTTCCTGAGAAACAAAATCATAAGCTCGTAAA 43631 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| | ||||| | || || | ||| |||| | ||| | || || ||||| Sbjct 43632 TTTAAAGCTAAACCAACTACTCCAATAGCACTCATCCATAAACCAGTTACTGGTACAAAT 43691 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 |||||||||||||||||||| | || ||| |||||||| ||| ||||||||||||||| Sbjct 43692 AGCATAAAGAAATGCAACCAACGTTTGTTAGAAAATGCAACACCGAAGATTTGAGACCAG 43751 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 |||||||| ||||||||||| |||||||| ||||| ||| || | | || || | Sbjct 43752 AAACGGTTAGCTGTAACCATAGAATAAGTTTCTTCAGATTGAGTTGGGTTAAACGCACGG 43811 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 43812 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTTGCACCATGAATA 43871 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | | || || |||||| || || ||||| ||||||||||| |||||||| | Sbjct 43872 GCACATAAAAGAGCAGCTCCCAAGACTCCAGCAACTCCCATCATATGAAATGGGTTTAAA 43931 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 |||||||||||||| || || | ||| | | ||||| || || |||||||||||||| Sbjct 43932 GTCCAGTTATGGAAACCTTGGAAGAATAAAATGAATCGGAAAATTGCTGCAACACCAAAA 43991 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || ||||| ||||||| || || || || || || || | ||| ||| |||||| Sbjct 43992 CTAGGTGCAAAAAACCAACCTGATTGACCAAGTGGGTAAATTAAAAATACAGAAACAAAA 44051 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || ||||| || ||||| || || || ||||| | | | | ||||| Sbjct 44052 ACAGCAATTGGGCCAGAAAAAGCAATTGCGTTATAAGGACGTAATTGTACGGATCTAGCA 44111 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | ||| ||||| || | ||| || || || | ||||| || || || ||||| || ||| Sbjct 44112 AGCTCAAATTGGCGCAACATAAAGCCTATTAAAGCAAAAGCTCCATGAAGAGCAACGAAA 44171 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | |||||||||||| ||||| |||||||| Sbjct 44172 GTCCATAGACCTCCTAATTGACACCAACGAGTGAAATCTCCTTGTGCTTCTGGACCCCAT 44231 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 | ||| | | ||||| | | | | |||||| || || |||||||| || || ||| Sbjct 44232 AATAGTAATAACGAATGTGCTAAACTATTAGCAGGAGTAGAAACAGCAGCAGTTAGAAAA 44291 Query 102550 TTAGCACCTTCAAGGTAA---CTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606 ||| |||||| | ||| ||| || | || || |||||||| ||||| |||| Sbjct 44292 TTACAACCTTCTAAATAAGAGCTA---GCCAATCCATGAGTATACCATGAAGTTACAAAA 44348 Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666 || || || |||| ||| || || | | | |||||| |||||||| | ||| ||| Sbjct 44349 GTTGTACCTGTAAACCATCCACCTAAAGAAAAATAAGCGCACGGAAAAAGTAATAGACCA 44408 Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCA 102712 |||||||| ||||| ||||| || |||| | | | ||||||||||| Sbjct 44409 GACCAACCTACAAATACAAAACGGTCTCTTCTTAGCCAGTCATCCA 44454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633497841349200