Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq1990 583 3e-162 >seq1990 Length=122890 Score = 583 bits (646), Expect = 3e-162 Identities = 722/985 (73%), Gaps = 2/985 (0%) Strand=Plus/Plus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || || || | ||| || ||||||||||| ||||| || |||||||| || || | Sbjct 53241 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 53300 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 |||||||| |||||||| | ||||||||||| ||||| || || | || | | | Sbjct 53301 CCAAGGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTAATAACACGACCTTGACTGTCA 53360 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | ||||||||| ||||||||||| || |||||||||||||| || | || | Sbjct 53361 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAAAGCCATAGTGCTGATACCTAAT 53420 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| ||||| |||||||| |||||||| ||||| | ||||| || | | ||| || Sbjct 53421 GCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAG 53480 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || ||||||||||| |||||||| || | | |||||| || ||||||||||| || || Sbjct 53481 TTGTTAAAGCTAGCGTATTGGAAAATTAATCTACCAAAGTAACCGTGAGCAGCTACGATG 53540 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 |||||||| |||||||||||||||||||||||||| ||| || | | ||||| Sbjct 53541 TTGTAAGTTTCTTCCTCTTGACCAAACTTGTAACCTGCGTTAGCAGACTCATTCTCAGTA 53600 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || ||||| || | || || || | | ||| ||||||||| ||| | | ||| Sbjct 53601 GTTTCACGGATTAAACTTGAAGTTACTAAGGAACCATGCATAGCACTGAATAGAGAGCCA 53660 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 || ||||| || || ||||| |||||||| || || |||||||| || ||||| ||||| Sbjct 53661 CCGAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 53720 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 |||||||| | |||| ||||||| || || || || || || |||||| | ||||| || Sbjct 53721 TGGAACACAATCATGAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCGTCAGAGAAG 53780 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || |||| || || | | ||| |||||||| ||||| || |||||||| || Sbjct 53781 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAA 53840 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121 || |||||| |||||| || | ||| |||| || ||||||||||||||||| || ||| Sbjct 53841 TATGCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCC 53900 Query 22122 ATGTAAGCAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTT 22180 |||| ||||| || |||| | |||||| | ||| | | | | | ||||| ||||| Sbjct 53901 ATGT-AGCAAGCTACACCAAGTAAGAAGTGAAGAACGATTAACTCGTAAGGACCACCGTT 53959 Query 22181 GTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGC 22240 ||| ||||||||||||| | ||||||||||||||||||||||||||| | ||||| || Sbjct 53960 GTAAAGCCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAAACCGATAGC 54019 Query 22241 ATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGC 22300 | | || | || || | || ||||||||||| || || | || || |||| Sbjct 54020 TGCAGAAGTAGGGATGATAGCAGCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGA 54079 Query 22301 GACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA 22360 || || || ||||| ||||| || || ||||| || || ||| || || |||||||| Sbjct 54080 AACAGGCTCACGGATACCATCAATATCTACAGGAGGAGCTGCAATGAAAGCAATAATAAA 54139 Query 22361 ACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAG 22420 || || || | | || |||||||| | || ||||||||||| | ||||| Sbjct 54140 TACAGAAGTTGCAGTTAATAGAGTAGGAATCATTAAAACACCGAACCATCCGATGTAAAG 54199 Query 22421 ACGGTTATTAGTAGAGGTGACCCAG 22445 ||||| | ||| ||| |||||| Sbjct 54200 GCGGTTTTCAGTGCTGGTAACCCAG 54224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146204544922200