Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1990 578 5e-160 >seq1990 Length=122890 Score = 578 bits (640), Expect = 5e-160 Identities = 730/995 (73%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| |||| |||| |||||| ||||||||||| || || | ||||||||||||||||||| Sbjct 53241 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 53300 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159 || | ||| || | ||| | | ||| |||| || | | || | | ||| Sbjct 53301 CCAAGGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTAATAACACGACCTTGACTGTCA 53360 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATA 124219 ||||| |||||||| ||||||||||| || |||||||| ||||| |||| |||||| | Sbjct 53361 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAAAGCCATAGTGCTGATACCTAAT 53420 Query 124220 GAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAG 124279 | || ||||| | || ||| ||||| || | |||| ||||||||| | | | ||| Sbjct 53421 GCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAG 53480 Query 124280 TTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATG 124339 ||||| || ||| || ||||| || | | ||||||||||||||| || ||||| ||| Sbjct 53481 TTGTTAAAGCTAGCGTATTGGAAAATTAATCTACCAAAGTAACCGTGAGCAGCTACGATG 53540 Query 124340 TTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTT 124399 ||||| |||||||| ||||| || ||||| ||||| ||| ||||| | ||| || Sbjct 53541 TTGTAAGTTTCTTCCTCTTGACCAAACTTGTAACCTGCGTTAGCAGACTCATTCTCAGTA 53600 Query 124400 GTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCT 124459 ||||| | ||||| | || || || | ||||||||||| || ||||| ||| || Sbjct 53601 GTTTCACGGATTAAACTTGAAGTTACTAAGGAACCATGCATAGCACTGAATAGAGAGCCA 53660 Query 124460 CCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCT 124519 ||||| | || ||||| || ||||||||| || ||||| || ||||| || || ||| Sbjct 53661 CCGAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 53720 Query 124520 TGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAAT 124579 ||||| || | ||| |||||||||||||| ||||| || | |||||||| |||||||| Sbjct 53721 TGGAACACAATCATGAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCGTCAGAGAAG 53780 Query 124580 GAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAA 124639 || ||||||| |||||| | ||||| ||||| ||||| | || || |||||| Sbjct 53781 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAA 53840 Query 124640 TAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCC 124699 || |||||| ||||||||||||||| ||||| | ||| |||||||||| | ||| Sbjct 53841 TATGCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCC 53900 Query 124700 ATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTA 124759 ||||| | | ||||| | |||||| | || | |||| ||||||||||| || Sbjct 53901 ATGTAGCAAGCTACACCAAGTAAGAAGTGAAGAACGATTAACTCGTAAGGACCACCGTTG 53960 Query 124760 TACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCG 124819 || | |||||||||||| | || |||||||| |||||||||||||| | |||||||| Sbjct 53961 TAAAGCCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAAACCGATAGCT 54020 Query 124820 TTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAA-AGAACCCGC 124878 || | || | | ||| |||||||||||||||| || || ||||| |||||| | Sbjct 54021 GCAGAAGTAGGGATGATAGCAGCAGAGATGATGTTGTTTCCGTA-AAGAAGAGAACCAGA 54079 Query 124879 TACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA 124938 || || || | ||| || || ||||| |||||||| |||||||| || |||| || || Sbjct 54080 AACAGGCTCACGGATACCATCAATATCTACAGGAGGAGCTGCAATGAAAGCAATAATAAA 54139 Query 124939 -ACATGCTGCTGCTGTGAGTA-AGCATGGAATCATTAGAACACCAAACCAACCAACATAA 124996 ||| | | ||| || | || || | |||||||||| |||||| ||||| || | ||| Sbjct 54140 TACA-GAAGTTGCAGTTAATAGAGTA-GGAATCATTAAAACACCGAACCATCCGATGTAA 54197 Query 124997 ATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 | | ||| | || || ||||| || ||||| Sbjct 54198 AGGCGGTTTTCAGTGCTGGTAACCCAGTCGCAGAA 54232 Score = 399 bits (442), Expect = 3e-106 Identities = 720/1050 (69%), Gaps = 23/1050 (2%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || ||||||||||||| ||| ||||| || || Sbjct 43448 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCTGGGAATACAAGATTTTCATGAGGCTG 43507 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || |||||||| |||||||| || || || || || Sbjct 43508 ATCTTGAGCTGCCATCCAAGCACGAATACCTTCATTTAGAAGAATATTTTTAGTGTAAAA 43567 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||| || || || |||||||| ||||| | || || ||||| ||||| || || |||| Sbjct 43568 AGTTTCAAATTCAGGGTCTTCAGCTGCACGAATTTCCTGAGAAACAAAATCATAAGCTCG 43627 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | || | |||| ||| || | || |||| |||| | ||| | || || || Sbjct 43628 TAAATTTAAAGCTAAACCAACTACTCCAATAGCACTCATCCATAAACCAGTTACTGGTAC 43687 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||| || || | | ||||||||||||||| | ||| || || || || Sbjct 43688 AAATAGCATAAAGAAATGCAACCAACGTTTGTTAGAAAATGCAACACCGAAGATTTGAGA 43747 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 |||||| | ||| ||||||| |||| |||||||||||| || || || | || || Sbjct 43748 CCAGAAACGGTTAGCTGTAACCATAGAATAAGTTTCTTCAGATTGAGTTGGGTTAAACGC 43807 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| ||| ||| | |||||| | || || Sbjct 43808 ACGGAA---TGTA-TTTG-----CACCATCACCA------------TCTTCAAATAAAGT 43846 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || |||||||||||||| ||||||| | || | || | | ||| ||||| Sbjct 43847 ATTTTCTACAGTTGCACCATGAATAGCACATAAAAGAGCAGCTCCCAAGACTCCAGCAAC 43906 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| || || || ||| ||||||||||| | |||||| || | Sbjct 43907 TCCCATCATATGAAATGGGTTTAAAGTCCAGTTATGGAAACCTTGGAAGAATAAAATGAA 43966 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 || || |||||||| ||||| || ||||| || ||||||| ||||| ||||| Sbjct 43967 TCGGAAAATTGCTGCAACACCAAAACTAGGTGCAAAAAACCAACCTGATTGACCAAGTGG 44026 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 || || | ||| | | || || || || |||| || || | |||||| || Sbjct 44027 GTAAATTAAAAATACAGAAACAAAAACAGCAATTGGGCCAGAAAAAGCAATTGCGTTATA 44086 Query 123526 AGGTC-TAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 ||| | |||| ||| || || | ||||||||| | | ||| || ||||| | Sbjct 44087 AGGACGTAAT-TGTACGGATCTAGCAAGCTCAAATTGGCGCAACATAAAGCCTATTAAAG 44145 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 |||| ||||||| | || || || ||||||||||||| | ||| |||||||| || Sbjct 44146 CAAAAGCTCCATGAAGAGCAACGAAAGTCCATAGACCTCCTAATTGACACCAACGAGTGA 44205 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAG 123704 | |||||||||||| || ||||| | | | | ||| | | | | ||| Sbjct 44206 AATCTCCTTGTGCTTCTGGACCCCATAATAGTAATAACGAATGTGCTAAACTATTAGCAG 44265 Query 123705 GTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCAT 123764 | || || || || || |||| || || || || | ||| || || | |||| Sbjct 44266 GAGTAGAAACAGCAGCAGTTAGAAAATTACAACCTTCTAAATAAGAGCTAGCCAATCCAT 44325 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 | ||||||||||| || || || || || ||| ||||| ||||| | || | ||| | Sbjct 44326 GAGTATACCATGAAGTTACAAAAGTTGTACCTGTAAACCATCCACCTAAAGAAAAATAAG 44385 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 | || || | |||||| ||||||||||| |||| ||||||||||| ||||| ||| || Sbjct 44386 CGCACGGAAAAAGTAATAGACCAGACCAACCTACAAATACAAAACGGTCTCTTCTTAGCC 44445 Query 123885 AGTCGTCAAGAACATCAAACCAACCTCTTG 123914 |||| || | | |||||| ||||| ||| Sbjct 44446 AGTCATCCATACTATCAAATAAACCTTTTG 44475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578983997414800