Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1990 646 1e-180 >seq1990 Length=122890 Score = 646 bits (716), Expect = 1e-180 Identities = 752/1008 (75%), Gaps = 6/1008 (1%) Strand=Plus/Plus Query 26712 TACAGGAGTTGACTCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTG 26771 ||||| || | ||| ||| ||| | || | || || || || ||||| | ||| || Sbjct 53228 TACAGAAGGAGCTTCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATG 53287 Query 26772 AATCACCTCTAATCCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACG 26831 || || || | ||||| ||||||||||| | ||| ||||||||||| | ||||| Sbjct 53288 CATAACTTCCATACCAAGGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTAATAACACG 53347 Query 26832 ACCCTGTGAATCAATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGT 26891 ||| || |||| ||||| || ||||||||||||||||| | ||||||||||| || Sbjct 53348 ACCTTGACTGTCAACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAAAGCCATAGT 53407 Query 26892 GGATACACCAAGTGCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTG 26951 | | ||| | ||| ||||||||||| || || || ||||| ||||| | ||||||||| Sbjct 53408 GCTGATACCTAATGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTG 53467 Query 26952 CAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATG 27011 || ||||| |||||||| || ||| |||||||| || || | ||| ||||| || || Sbjct 53468 TAAAGAACGAGAGTTGTTAAAGCTAGCGTATTGGAAAATTAATCTACCAAAGTAACCGTG 53527 Query 27012 TGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGA 27071 || || ||||||||||| || ||||| |||||||| ||||| ||||| ||| || Sbjct 53528 AGCAGCTACGATGTTGTAAGTTTCTTCCTCTTGACCAAACTTGTAACCTGCGTTAGCAGA 53587 Query 27072 CTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGA 27131 |||| | ||||| || ||||||| | || || || | || ||||||||| Sbjct 53588 CTCATTCTCAGTAGTTTCACGGATTAAACTTGAAGTTACTAAGGAACCATGCATAGCACT 53647 Query 27132 GAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGAT 27191 ||| ||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||||| Sbjct 53648 GAATAGAGAGCCACCGAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGGAT 53707 Query 27192 ATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCAT 27251 |||||||| || ||||| |||| |||| |||| |||||||||||||| || | |||||| Sbjct 53708 GTTGTGTTCAGCTTGGAACACAATCATGAAGTTGAAAGTACCAGAGATTCCTAAAGGCAT 53767 Query 27252 AGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGC 27311 | | || ||||| |||||||| | || |||| | ||| || ||| | ||||| || Sbjct 53768 ACCGTCAGAGAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGC 53827 Query 27312 GACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTC 27371 || ||||| |||||||| ||| |||||| ||||||||||||||||| || ||||| Sbjct 53828 AACAGGAGCTGAATATGCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTC 53887 Query 27372 CCACTCACGTCCCATATAAGCATAG--ATGCCGATAAGGAAGTGGAAGACTACCAGTTGG 27429 ||||||||| ||||| | |||| || | || | | |||||| | || | | | | Sbjct 53888 CCACTCACGACCCATGT-AGCA-AGCTACACCAAGTAAGAAGTGAAGAACGATTAACTCG 53945 Query 27430 AAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAG 27489 ||||||||||||| || | ||| ||||| | || || |||||||| |||||||||||| Sbjct 53946 TAAGGACCACCGTTGTAAAGCCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAGAAG 54005 Query 27490 TGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATAC 27549 || | |||||| || ||| | |||| | ||| |||| ||||||||||| || || Sbjct 54006 TGCAAACCGATAGCTGCAGAAGTAGGGATGATAGCAGCAGAGATGATGTTGTTTCCGTAA 54065 Query 27550 ATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATG 27609 | ||| ||||||| ||| || ||||| ||||| |||||||| || || || ||||| ||| Sbjct 54066 AGAAGAGAACCAGAAACAGGCTCACGGATACCATCAATATCTACAGGAGGAGCTGCAATG 54125 Query 27610 AATGCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAA 27668 || || | ||| || |||| |||||| | ||| || || || ||||| | |||||||| Sbjct 54126 AAAGCAATAATAAATACAGA-AGTTGCAGTTAATAGAGTAGGAATCATTAAAACACCGAA 54184 Query 27669 CCAACCAACATACAAACGGTTGTTAGTTGATGTCACCCACTCACAGAA 27716 ||| || | || | ||||| | ||| || ||||| || ||||| Sbjct 54185 CCATCCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCAGTCGCAGAA 54232 Score = 502 bits (556), Expect = 3e-137 Identities = 721/1012 (71%), Gaps = 8/1012 (1%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGTG 23442 || ||||||| || || | ||| || | ||||| | |||| || ||||| || | Sbjct 43447 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCTGGGAATACAAGA---TTTTCATGAG 43503 Query 23443 GTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGT 23502 | || || || |||||| |||| | || | || | | ||||||||| |||| Sbjct 43504 GCTGATCTTGAGCTGCCATCCAAGCACGAATACCTTCATTTAGAAGAATATTTTTAGTGT 43563 Query 23503 AGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 | || || ||| | | |||||||| |||||||| || ||| ||||||||||||| Sbjct 43564 AAAAAGTTTCAAATTCAGGGTCTTCAGCTGCACGAATTTCCTGAGAAACAAAATCATAAG 43623 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAG 23622 | || | ||| | ||| | |||| | ||||||| | | ||| | ||| | || | Sbjct 43624 CTCGTAAATTTAAAGCTAAACCAACTACTCCAATAGCACTCATCCATAAACCAGTTACTG 43683 Query 23623 GAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTT 23682 | ||||| | ||||||||| ||||||||||| || || ||| ||||| |||||||||| Sbjct 43684 GTACAAATAGCATAAAGAAATGCAACCAACGTTTGTTAGAAAATGCAACACCGAAGATTT 43743 Query 23683 GTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGA 23742 | ||||| ||||| || ||||||||||| ||||| || || || ||||| | | | Sbjct 43744 GAGACCAGAAACGGTTAGCTGTAACCATAGAATAAGTTTCTTCAGATTGAGTTGGGTTAA 43803 Query 23743 ACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTC 23802 |||| || || ||||| || ||||||||| | | ||||| || ||||| | | Sbjct 43804 ACGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTTGCAC 43863 Query 23803 CATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGG 23862 ||||||||||| | | ||| || |||||| | |||||||||||||||||||| || | Sbjct 43864 CATGAATAGCACATAAAAGAGCAGCTCCCAAGACTCCAGCAACTCCCATCATATGAAATG 43923 Query 23863 GGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAA 23922 |||| | ||||||||||| || || |||| ||| | || ||| | |||||| || |||| Sbjct 43924 GGTTTAAAGTCCAGTTATGGAAACCTTGGAAGAATAAAATGAATCGGAAAATTGCTGCAA 43983 Query 23923 CACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAG 23982 |||| ||||| || ||||| |||||| ||| || || | || || || | ||||||| Sbjct 43984 CACCAAAACTAGGTGCAAAAAACCAACCTGATTGACCAAGTGGGTAAATTAAAAATACAG 44043 Query 23983 ACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTA 24042 | || || |||||||| || |||||||||||||| || || || ||||| | | | Sbjct 44044 AAACAAAAACAGCAATTGGGCCAGAAAAAGCAATTGCGTTATAAGGACGTAATTGTACGG 44103 Query 24043 GACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAG 24102 | || || ||||| || || |||||||| ||||| | ||||| || || || |||| Sbjct 44104 ATCTAGCAAGCTCAAATTGGCGCAACATAAAGCCTATTAAAGCAAAAGCTCCATGAAGAG 44163 Query 24103 CAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCG-TTGAAAGTCCCCTTGAGACTCA 24161 |||| || | ||| || ||||| | ||| ||| || ||||| || ||||| | || Sbjct 44164 CAACGAAAGTCCATAGACCTCCTAATTGACACCAACGAGTGAAA-TCTCCTTGTGCTTCT 44222 Query 24162 GGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCC 24221 |||||||| | ||| | | ||||| | | | | |||||| || || ||||| || Sbjct 44223 GGACCCCATAATAGTAATAACGAATGTGCTAAACTATTAGCAGGAGTAGAAACAGCAGCA 44282 Query 24222 GTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTA 24281 || ||||| ||| ||| || | ||| || ||||| | |||||| || ||||| || Sbjct 44283 GTTAGAAAATTACAACCTTCTAAATAAGAGCTAGCCAATCCATGAGTATACCATGAAGTT 44342 Query 24282 ACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGG 24341 ||||||| ||| || |||| ||| || || | | || |||||| |||| ||||| Sbjct 44343 ACAAAAGTTGTACCTGTAAACCATCCACCTAAAGAAAAATAAGCGCACGGAAAAAGTAAT 44402 Query 24342 AGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCA 24393 || ||||||||||| ||||| ||||| || || | | | | |||||| |||| Sbjct 44403 AGACCAGACCAACCTACAAATACAAAACGGTCTCTTCTTAGCCAGTCATCCA 44454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665477845826800