Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1794 138 1e-27 seq1979 105 8e-18 seq1886 100 3e-16 seq1945 93.3 5e-14 seq1833 82.4 9e-11 >seq1794 Length=856596 Score = 138 bits (152), Expect = 1e-27 Identities = 310/458 (68%), Gaps = 16/458 (3%) Strand=Plus/Plus Query 76139 AATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAAT 76198 ||||||||| || | || || ||| | ||| ||||| ||| ||||| ||| || || Sbjct 304727 AATCTAAACAGAATTATCGATGTAAACTATTACCCCGTCGAGGCTGCGAGAAGATCGAAC 304786 Query 76199 ATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGC 76258 ||||| || | ||||||||| | || || ||||| || || || | || ||| || Sbjct 304787 ATGCGCCATCGTCCTATTGGTCTCGGAGTGCAAGGCCTTGCTGACGCCTTCATTCTGCTT 304846 Query 76259 CGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATG 76318 || |||||||||| || || ||| || || | || ||| ||||| ||||| Sbjct 304847 GGCATGCCATTTGATTCTGAAGAGGCCCAGAAGCTCAACAGAGATATATTTGAGACCATA 304906 Query 76319 TAT---CACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAG 76375 || |||||| ||| | | || |||||||| | || | ||| ||| || Sbjct 304907 TACTACCACGCA---CTGAGGACCTCATGCGAATTGGCAGCAGAGGAGGGTGTCTACGAA 304963 Query 76376 ACATTTGAGGGTTCTCCCGCGTCCCAAGGGG-TGCTTCAGTTTGATATGTGGGAAGGTGA 76434 || | ||| || | ||| | |||||| | ||||| ||||||||||| | | | Sbjct 304964 ACGTATGATGGATGTCCTAT-TAGCAAGGGACTCCTTCAACCGGATATGTGGGATG-TCA 305021 Query 76435 AACCAAGCTCAAC-TACGACTGGGATGTTCTCAAGGAACGCATCAAGG---AGAAGGGTC 76490 | || ||||| | |||||||||| | | | |||||| | | |||| ||| Sbjct 305022 AGCCCTCCTCAAGATGGGACTGGGATGCTTTGAG---ACGCATGATTGCTAAGAACGGTG 305078 Query 76491 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 76550 | |||||| |||| | |||| || ||||| ||||| || ||| ||||||||||| | Sbjct 305079 TGCGTAACTCTCTTCTTTTGGCTCCCATGCCCACAGCATCAACCAGTCAAATCTTGGGCA 305138 Query 76551 ATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 | ||||||||||| || || |||||| | || |||||| Sbjct 305139 ACAATGAATGCTTCGAGCCTTACACATCGAATATCTAC 305176 Score = 105 bits (116), Expect = 8e-18 Identities = 317/480 (66%), Gaps = 11/480 (2%) Strand=Plus/Plus Query 75353 CAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGA 75412 ||| || ||||||||||||| | || ||| | ||| || | |||||||| | Sbjct 303515 CAGCTGAGCAGTTGCTTCCTTGTATGCACCAAAGGCGACAGCATTGAGGGTATCTACGAC 303574 Query 75413 ACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCAT 75472 ||||| | ||||||||| || |||| ||||| || ||||| || | ||| Sbjct 303575 ACTCTGAAGGAGTGTGCTGTTATTAGCAAGTCAGCTGGTGGAATTGGTTTGTCAGTTCAT 303634 Query 75473 GATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTAT 75531 || | | || | | | || ||||| || ||||| || || |||| || || Sbjct 303635 AATATCCGTGCTACTGGCAGCTAC-ATTCGTGGCACAAACGGGACTTCTAATGGGATCAT 303693 Query 75532 TCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC---- 75587 || ||| | | ||||| || | |||||| || || || | || | | |||| | Sbjct 303694 CCCGATGTTGAGGGTATTCAATGACACAGCTCGGTACGTCGACCAGG-GTGGCGGCAAGA 303752 Query 75588 GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTG 75647 | ||||| | |||| |||| |||| || |||||||||||||| | || | || | Sbjct 303753 GGAAGGGCGCTTTCGCTATCTATCTGGAGCCGTGGCATGCCGATATATTCGATTGGCTGG 303812 Query 75648 AG-TTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTG 75706 | ||| || || || || | || || | || | ||||||| || | ||| Sbjct 303813 ATCTTAGGAAG-AATCATGGGAAGGAGGAAAATAGGGCTCGAGATCTATTCTATGGTCTG 303871 Query 75707 TGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGT 75766 |||||||||||||||||||||| || || | ||| ||| ||||||||||||||| Sbjct 303872 TGGATTCCAGACCTTTTCATGAGACGTGTGCAAGAGAATGGCGTATGGTCTCTTTTCTGC 303931 Query 75767 CCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACAC 75825 || | |||| ||||| || | || || | |||||| |||||||| |||||||| Sbjct 303932 CCCAATGAGGCTCCAGGACTGGCAGATTGCTG-GGGTGAAGAGTTTGAGAAGCTCTACAC 303990 >seq1979 Length=3181686 Score = 105 bits (116), Expect = 8e-18 Identities = 249/372 (67%), Gaps = 8/372 (2%) Strand=Plus/Plus Query 175222 GAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCC 175281 ||||| ||||| |||| ||||| | ||| | ||||| | ||| || ||||| Sbjct 1435676 GAACTACAAGAGGTTGTCGATTTCTTGAAGAACCCCGACAAATACACTGCCCTCGGTGCT 1435735 Query 175282 AAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCC 175341 ||||| ||| || || |||| || || || || |||||||| | ||||| Sbjct 1435736 AAGATTCCCAAGGGATGTCTGCTCGTCGGCCCACCTGGAACAGGAAAGACTTTGCTCGCA 1435795 Query 175342 CGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTG 175401 |||| | | || || | |||||||||| || ||| | ||| | | || || Sbjct 1435796 AGAGCTGTTTCCGGAGAGGCTGGTGTCCCATTCTTCTCATGCGCAGCCTCCGAATTCGTC 1435855 Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC--CGCG 175459 || | |||||||||||||| || | ||||| ||| | || |||| ||| ||| Sbjct 1435856 GAACTCTTTGTTGGTGTGGGAGCTTCCCGTGTTCGTGATTTGTTCGAAAAGGCCAAAGCG 1435915 Query 175460 AAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCG 175519 || | || || || || ||||| |||||||||||||| || || | ||| | | | Sbjct 1435916 AAGGCC--CCTTGCATCGTTTTCATCGATGAGATTGATGCCGTTGGAAGGCAGAGAGGTG 1435973 Query 175520 CTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGA 175577 | || ||| | | || ||| ||||| |||| || || ||||| || || ||||| || Sbjct 1435974 CCGGTATGGGAGG--AGGAAACGACGAACGAGAGCAGACCATTAACCAGCTGCTCACAGA 1436031 Query 175578 GATGGATGGCTT 175589 ||||||||| || Sbjct 1436032 GATGGATGGTTT 1436043 >seq1886 Length=1372085 Score = 100 bits (110), Expect = 3e-16 Identities = 189/274 (69%), Gaps = 7/274 (3%) Strand=Plus/Plus Query 64957 TACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAA-GCCATCCAAACTGTACCATG 65015 |||||||| ||| | |||| |||| |||| ||| || ||||| | || |||| || Sbjct 694375 TACATTAAAGATCAAGCTGAGAAGA-GCAGACTTTTCAATGCCATTGAGACCATACCTTG 694433 Query 65016 TATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGT-CTCGCTCCTTCG 65074 ||| | |||||| | ||||| | |||||| | |||| || || | ||| | Sbjct 694434 CGTTGCTAGGAAGGCTGACTGGGCTCTAAAATGGATCGACA----GTGCTGGGAGCTTTG 694489 Query 65075 CCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG 65134 | ||| | | | || || || || || ||||| || ||||| || ||| || |||| Sbjct 694490 CAGAGAGAATCCTGGCTTTCGCCTGCGTCGAGGGGATTTTCTTTTCAGGGAGTTTTTGCG 694549 Query 65135 CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTA 65194 | || | |||| | |||||| | ||||| |||||||| || || || || ||||| | Sbjct 694550 CCATCTTTTGGCTCAAGAAGAGAGGTCTTATGCCAGGGCTTACGTTTTCCAACGAACTCA 694609 Query 65195 TTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | || ||||||||||| || ||| || ||||| Sbjct 694610 TCTCACGAGATGAGGGCCTGCACTGCGATTTTGC 694643 >seq1945 Length=2262169 Score = 93.3 bits (102), Expect = 5e-14 Identities = 249/379 (66%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 175213 GCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGA 175272 ||||| ||| ||| |||| ||||||||||||| ||| | || || | ||| | Sbjct 521084 GCCAAGCTTGAGCTTCAAGAAGTTGTGGATTTTCTGAAGAACCCTGACAAATACACAGCC 521143 Query 175273 AGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACC 175332 ||||||||||| ||| || | |||| ||| || || || |||||||| Sbjct 521144 CTAGGTGCCAAGATTCCCAAGGGATGTTTGCTCGTCGGTCCTCCCGGAACAGGAAAGACT 521203 Query 175333 CTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCA 175392 || ||||| | || | | || || | ||| || ||| || ||| | ||| || Sbjct 521204 CTTCTCGCAAGGGCTGTGTCCGGAGAGGCCGGTGTTCCTTTCTTCTCATGCGCAGCCTCA 521263 Query 175393 AACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATC 175452 | || || || | || || |||||||| || | || ||||| | || || | Sbjct 521264 GAATTCGTTGAACTCTTCGTCGGTGTGGGAGCTTCTCGTGTCCGCGACTTGTTCGAGAAG 521323 Query 175453 GCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAA 175512 ||| | || || || || |||||||| |||||||||||||| ||||| | ||| Sbjct 521324 GCCAAGGCTAAGGCTCCTTGCATCGTCTTCATCGATGAGATTGATGCCGTGGGTAGGCAG 521383 Query 175513 CGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTAC 175570 | | || || ||| | | || |||||| ||| | || || || ||||| ||||| | Sbjct 521384 AGAGGAGCCGGTATGGGAGG--AGGAAATGATGAGCGGGAGCAGACCATTAACCAACTGC 521441 Query 175571 TCACCGAGATGGATGGCTT 175589 | || |||||||| || || Sbjct 521442 TTACAGAGATGGACGGTTT 521460 >seq1833 Length=1020455 Score = 82.4 bits (90), Expect = 9e-11 Identities = 192/287 (67%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || |||||||| || || || ||||| | || || || ||||| | | ||| Sbjct 229570 TTCGTCGAGATGTTCGTGGGAGTTGGTGCATCGCGAGTACGTGACCTCTTCAAGAAAGCC 229511 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || ||||||||||| | || ||||| ||||| || || |||| | Sbjct 229510 AAAGAGAATGCTCCTTGTATTGTCTTTGTGGACGAGATCGATGCTGTCGGACGGCAAAGG 229451 Query 175516 AGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | |||| |||| | |||| || || |||||||||| | || || || || Sbjct 229450 GGTACTGGCATTGGT--GGTGGCAAC-GATGAACGAGAACAAACCTTGAACCAGCTCCTG 229394 Query 175573 ACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 || || |||||||| ||||| | || || || | |||||||| || || || | Sbjct 229393 ACAGAAATGGATGGATTTGAGGGCAACACAGGTGTTATAGTTATTGCTGCTACCAACAGA 229334 Query 175633 GTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 | ||||||||||||| || | | || || ||||| |||||||| Sbjct 229333 GCTGATATCCTTGATGCTGCTTTATTGCGACCCGGTCGCTTTGATCG 229287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596554760331200