Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1990 583 3e-162 >seq1990 Length=122890 Score = 583 bits (646), Expect = 3e-162 Identities = 722/985 (73%), Gaps = 2/985 (0%) Strand=Plus/Minus Query 41242 CTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCC 41301 |||||| ||| ||| | ||||| ||||| | ||||||||||| || | |||||||| Sbjct 54224 CTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTAATGATTCC 54165 Query 41302 GTGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGA 41361 || | | || || || |||||||| || || ||| || || ||||| || Sbjct 54164 TACTCTATTAACTGCAACTTCTGTATTTATTATTGCTTTCATTGCAGCTCCTCCTGTAGA 54105 Query 41362 CATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATC 41421 || ||||| ||||| || || || |||| || || | || || ||||||||||| || Sbjct 54104 TATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAACATCATCTC 54045 Query 41422 AGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGC 41481 | || || | || | | || ||||| | ||||||||||||||||||||||| Sbjct 54044 TGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAATTTGGGAAGC 53985 Query 41482 TGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTT 41541 |||| | ||||||||||||| |||||||| ||||| | | | | | ||| | ||||| Sbjct 53984 TGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGTTCTTCACTT 53925 Query 41542 CCTCATTGGCGTCT-TTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGA 41600 | | |||| || ||||| ||||||| || ||||||||||||||||| || |||| | Sbjct 53924 CTTACTTGGTGTAGCTTGCT-ACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTA 53866 Query 41601 TGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCC 41660 || | || |||||| |||||| || || |||||||| || ||||| |||||||| ||| Sbjct 53865 TGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCT 53806 Query 41661 TTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCA 41720 | | || || |||| || || || ||||| | |||||| || || || || || | Sbjct 53805 TGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAATCTCTGGTA 53746 Query 41721 CCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACA 41780 | ||||||| |||| | |||||||| ||||| ||||| || |||||||| || || |||| Sbjct 53745 CTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCCATTCCACA 53686 Query 41781 TGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGG 41840 |||| ||||| || || ||||| ||||| | | ||| ||||||||| ||| | | | Sbjct 53685 TGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGGTTCCTTAG 53626 Query 41841 TCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGT 41900 | || || | || ||||| || ||||| | | || ||| |||||||||| Sbjct 53625 TAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGGTTACAAGT 53566 Query 41901 TTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTA 41960 |||||||||||||||| |||||||| || || ||||||||||| || |||||| | | | Sbjct 53565 TTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGGTAGATTAA 53506 Query 41961 TCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGC 42020 | |||||||| ||||||||||| || || ||| | | || ||||| | ||||| |||| Sbjct 53505 TTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGC 53446 Query 42021 CTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATG 42080 |||| |||||||| ||||| |||| | || | || |||||||||||||| || | Sbjct 53445 CTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAACTTAAACG 53386 Query 42081 GTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTG 42140 |||||||||| ||||||||| | | | | | || | || || ||||| ||||||| Sbjct 53385 GTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAACACTTGGGCTG 53326 Query 42141 ACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACT 42200 |||| | |||||||| |||||||| | || || |||||||| || ||||| ||||||| Sbjct 53325 ACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACT 53266 Query 42201 TCCCGCTTGACCTTGCATCCGTGGA 42225 |||| || ||| | || || || || Sbjct 53265 TCCCTCTAGACTTAGCTTCTGTTGA 53241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146210944770960