Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq1990 533 4e-147 >seq1990 Length=122890 Score = 533 bits (590), Expect = 4e-147 Identities = 712/987 (72%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || ||||||| || ||| | ||||| ||||| | || ||||| Sbjct 54241 TGGGGTCGCTTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTC 54182 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| | |||||||| ||| | |||| || | ||| |||||| | |||||||| Sbjct 54181 GGTGTTTTAATGATTCCTACTCTATTAACTGCAACTTC-TGTATTTATTATTGCTTTCAT 54123 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||| || ||||| ||||| |||||||| || ||||| ||||| ||||| |||||||| || Sbjct 54122 TGCAGCTCCTCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTA 54063 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || |||||||||||||||| ||| || | |||| | || || || | || || Sbjct 54062 CGGAAACAACATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTT 54003 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | || |||| |||||||| ||||| || || ||||| | Sbjct 54002 CTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGA 53943 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 | | |||| | |||||| | | ||| | | ||| |||| || || |||||||| Sbjct 53942 GTTAATCGTTCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 53883 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | ||||| | || ||| | || |||||| |||||| || || || ||||| || || Sbjct 53882 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGC 53823 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || ||| | |||| ||| |||| ||||| || || || || ||||| Sbjct 53822 TGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCC 53763 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 | | || || || ||||| |||||||||||| | || ||||| |||||||| ||||| || Sbjct 53762 TTTAGGAATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCT 53703 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || ||||| ||||||||||| || || ||||| ||||| || | ||| || Sbjct 53702 TATGCACCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGC 53643 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || || || | | | |||||||| ||||| || || Sbjct 53642 TATGCATGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGC 53583 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 || || |||||||| ||||||||||| || ||||| ||||| || || || || || Sbjct 53582 TAACGCAGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGG 53523 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTT 43058 ||||||||| | | || |||||||| || ||||| || ||| ||||| ||||| Sbjct 53522 TTACTTTGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTT 53463 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| | || |||||||| || || || || ||||||||| | | || |||| ||||| Sbjct 53462 CTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTAT 53403 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGT 43178 ||| || ||||| || ||||| ||||| |||||||| ||||||| | ||| || ||| Sbjct 53402 GGCTTTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGT 53343 Query 43179 CATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGA 43238 || ||||||||||| || | || ||||| |||||||| | || || ||||| || Sbjct 53342 TATTAACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 53283 Query 43239 GCGGAATGCACATAACTTCCCGCTTGA 43265 || || || || |||||||| || || Sbjct 53282 ACGTAACGCTCACAACTTCCCTCTAGA 53256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143529408140520