Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq1990 475 1e-129 >seq1990 Length=122890 Score = 475 bits (526), Expect = 1e-129 Identities = 707/991 (71%), Gaps = 10/991 (1%) Strand=Plus/Plus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||||||| || || ||||| ||||| ||||| || ||||||||||| | || ||| Sbjct 53247 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAAGG 53306 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACA-TCTACTAC 25992 ||||| ||||| | | |||||||| || | || || | | || || || || || Sbjct 53307 TTAGCACGGTTGATGATGTCAGCCCAAGT-GTTAATAACACGACCTTGACTGTCAACAAC 53365 Query 25993 TGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGT 26052 || ||||| ||||| ||||| |||| ||| || ||||| |||| |||||| | | || Sbjct 53366 AGATTGGTTGAAGTTGAAACCGTTTAAGTTGAAAGCCATAGTGCTGATACCTAATGCAGT 53425 Query 26053 CAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT 26112 | ||| || || || || ||||||| ||| | ||||| || | |||||| ||| || Sbjct 53426 GAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTT 53485 Query 26113 AAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATA 26172 ||| || || || || ||||||||||| |||||||| ||||| ||||| || || || || Sbjct 53486 AAAGCTAGCGTATTGGAAAATTAATCTACCAAAGTAACCGTGAGCAGCTACGATGTTGTA 53545 Query 26173 TGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTC 26232 || ||||| ||||| |||||||| || || || || | | ||| || ||||| Sbjct 53546 AGTTTCTTCCTCTTGACCAAACTTGTAACCTGCGTTAGCAGACTCATTCTCAGTAGTTTC 53605 Query 26233 TGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAA 26292 || | ||||| || || || ||||||||| ||| |||| |||||||| Sbjct 53606 ACGGATTAAACTTGAAGTTACTAAGGAACCATGCATAGCACTGAATAGAGAGCCACCGAA 53665 Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352 || ||||| |||||| ||| |||||||||||||| || || || ||||| |||||||| Sbjct 53666 TACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAA 53725 Query 26353 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCC 26412 || | ||| ||||| |||||||||||||| || | |||||| || ||| || || || Sbjct 53726 CACAATCATGAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCGTCAGAGAAGCTTCC 53785 Query 26413 TTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGC 26472 ||| || | || || | ||||| || || ||| || | | || |||| |||||| Sbjct 53786 TTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATATGC 53845 Query 26473 AACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATA 26532 |||| ||||| || | ||| |||| | ||| |||||||||| | || ||| Sbjct 53846 AACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACC--CATG 53903 Query 26533 T-GC-TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTAT 26590 | || ||||| || | ||||||||| | | || | | || || || || ||||| Sbjct 53904 TAGCAAGCTACACCAAGTAAGAAGTGAAGAACGATTAACTCGTAAGGACCACCGTTGTAA 53963 Query 26591 AGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTA 26650 ||||| || || | | |||||||||| || ||||| || || | ||||| || | Sbjct 53964 AGCCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAAACCGATAGCTGCA 54023 Query 26651 GAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACT 26710 || | |||| || || | || || || ||||||||||| | | || || ||||| Sbjct 54024 GAAGTAGGGATGATAGCAGCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGAAACA 54083 Query 26711 GGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACA 26769 |||||||| || ||||| ||||||||||| || ||||| ||||| |||| ||||| ||| Sbjct 54084 GGCTCACGGATACCATCAATATCTACAGGAGGAGCTGCAATGAAAGCAATAATAAATACA 54143 Query 26770 TGTAGTGGCTGCGAGTA-AGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGAC 26828 | ||| || | | || || | || ||||| | || ||||||||||| | || || | Sbjct 54144 -GAAGTTGCAGTTAATAGAGTA-GGAATCATTAAAACACCGAACCATCCGATGTAAAGGC 54201 Query 26829 GGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 |||| ||||| || |||||||| || || || Sbjct 54202 GGTTTTCAGTGCTGGTAACCCAGTCGCAGAA 54232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147708509380800