Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq1990 652 0.0 >seq1990 Length=122890 Score = 652 bits (722), Expect = 0.0 Identities = 739/991 (75%), Gaps = 0/991 (0%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||||| || |||| |||||| | || |||| |||||||||||| | | Sbjct 54231 TCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTAA 54172 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||| ||| || | |||| || | || ||| | || |||||||| || |||| Sbjct 54171 TGATTCCTACTCTATTAACTGCAACTTCTGTATTTATTATTGCTTTCATTGCAGCTCCTC 54112 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 ||||||| ||||||||||| ||||| || || |||||||| | | || || ||||||| Sbjct 54111 CTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAACA 54052 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 ||||||||| |||| | |||||| ||| || || ||| | |||||||| || |||| Sbjct 54051 TCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAATTT 53992 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| || | ||||||| ||| | ||||| |||||||||| | | | | || Sbjct 53991 GGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGTTC 53932 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTC 155329 | |||||| | | || | | ||| |||||| ||||||||||| |||||| Sbjct 53931 TTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGTT 53872 Query 155330 TTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTG 155389 | || ||||||||||||||| ||||||||| || || || || | ||||| |||| Sbjct 53871 TAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTG 53812 Query 155390 TATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCT 155449 | ||| | | || || | |||||||| |||||||| | |||||| | || |||| Sbjct 53811 TTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAATCT 53752 Query 155450 CTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCT 155509 |||||||||| |||| ||| | ||||||||||| |||||||| |||||||||||||| | Sbjct 53751 CTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCCAT 53692 Query 155510 TCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTT 155569 ||||||||||||| ||||| ||||| |||||||| ||||| ||| ||||||||| |||| Sbjct 53691 TCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGGTT 53632 Query 155570 CATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTT 155629 | || || || || |||||||||||||||||||| | |||||| ||| |||| Sbjct 53631 CCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGGTT 53572 Query 155630 ACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTC 155689 ||||||| || ||||| ||||||||||| ||||| || |||||||| || ||||| ||| Sbjct 53571 ACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGGTA 53512 Query 155690 GTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTG 155749 | | || ||||| || || ||| |||||||| | | | ||||||||| | |||| Sbjct 53511 GATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGCTG 53452 Query 155750 CATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACC 155809 | |||||||| || | |||||| ||||| | ||| | || ||||| |||||| Sbjct 53451 CTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAACT 53392 Query 155810 TTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACAT 155869 | |||||||||||||||||||| ||||| || ||| | ||| || || || | Sbjct 53391 TAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAACACTT 53332 Query 155870 GGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTC 155929 |||| ||||| | ||||| ||| |||||||||||||| ||||| || |||||||||| Sbjct 53331 GGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTC 53272 Query 155930 ACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 ||||||||||||| ||| | ||| ||| ||| Sbjct 53271 ACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584820652224400