Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq1990 657 0.0 >seq1990 Length=122890 Score = 657 bits (728), Expect = 0.0 Identities = 745/992 (75%), Gaps = 14/992 (1%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||| ||| | ||| ||||||||||||||||||||||| || |||||||||||||| Sbjct 53241 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 53300 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC---G 67469 ||||| || | ||| | |||||| |||||||| ||| || || |||| | Sbjct 53301 CCAAGGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTAATAAC---ACGACCTTGACTG 53357 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || ||||||||||||||||||||||| | |||||| |||||||| | ||| Sbjct 53358 TCAACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAAAGCCATAGTGCTGATACCT 53417 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | ||||||||||||||| | || ||||| | ||||| | ||||||||| | | | Sbjct 53418 AATGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGA 53477 Query 67590 GAGTTGTTGAAAGAT-GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAAC 67648 |||||||| |||| | || || ||||| || || | ||| ||||| || |||||||| || Sbjct 53478 GAGTTGTT-AAAGCTAGCGTATTGGAAAATTAATCTACCAAAGTAACCGTGAGCAGCTAC 53536 Query 67649 AATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708 ||||||||||| ||||| ||||| || ||||||||||| ||| ||||| | ||| Sbjct 53537 GATGTTGTAAGTTTCTTCCTCTTGACCAAACTTGTAACCTGCGTTAGCAGACTCATTCTC 53596 Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768 ||||||||| | ||| | | ||||| || | ||||| ||||||||||| || || || Sbjct 53597 AGTAGTTTCACGGATTAAACTTGAAGTTACTAAGGAACCATGCATAGCACTGAATAGAGA 53656 Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828 |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| || Sbjct 53657 GCCACCGAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGTTC 53716 Query 67829 TGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888 ||||||||||| | |||| |||| ||||||||||| || || | |||||| ||||||| Sbjct 53717 AGCTTGGAACACAATCATGAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCGTCAGA 53776 Query 67889 GAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGC 67948 ||| |||||||| | || |||| |||||| ||||| || || | || ||||| Sbjct 53777 GAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGC 53836 Query 67949 AGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACG 68008 || ||||| ||| |||||||||||||||||| | |||||| ||||||||||| ||| Sbjct 53837 TGAATATGCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACG 53896 Query 68009 ACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACC 68068 ||| ||| | | || | | |||||| | || | | | | |||| ||||| Sbjct 53897 ACCCATGTAGCAAGCTACACCAAGTAAGAAGTGAAGAACGATTAACTCGTAAGGACCACC 53956 Query 68069 ATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGAT 68128 || || | ||| ||||| | | || |||||||| || || |||||||| | |||||| Sbjct 53957 GTTGTAAAGCCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAAACCGAT 54016 Query 68129 TGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACC 68188 || ||| |||| | | |||| |||| ||||||||||| ||||| | || ||||| Sbjct 54017 AGCTGCAGAAGTAGGGATGATAGCAGCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACC 54076 Query 68189 TGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGAT 68248 | |||||| || | ||||||||| ||||| || ||||| ||||||||||| ||||| || Sbjct 54077 AGAAACAGGCTCACGGATACCATCAATATCTACAGGAGGAGCTGCAATGAAAGCAATAAT 54136 Query 68249 GAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAAC 68305 || ||||||| | | || || ||||||||| || ||||||||||| || | Sbjct 54137 AAATACAGAAGTTGCAGTTAATAG--AG-TAGGAATCATTAAAACACCGAACCATCCGAT 54193 Query 68306 ATAGATGCGATTGTCAACTGAGGTGACCCAGT 68337 || | ||| || ||| ||| ||||||| Sbjct 54194 GTAAAGGCGGTTTTCAGTGCTGGTAACCCAGT 54225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566933097188400