Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1990 738 0.0 >seq1990 Length=122890 Score = 738 bits (818), Expect = 0.0 Identities = 767/997 (77%), Gaps = 10/997 (1%) Strand=Plus/Plus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||| ||| | ||| |||||||||||||| |||||||| |||||||||||||||||| Sbjct 53241 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 53300 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953 || | ||| ||||||| | ||| ||||| || | ||| ||| ||| ||| Sbjct 53301 CCAAGGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTAATAACACGACCTTGACTGTCA 53360 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGT 68013 | | ||| ||||||||||||||||| || | |||||| ||||| ||||| | ||| | | Sbjct 53361 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAAAGCCATAGTGCTGATACCTAAT 53420 Query 68014 GCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAG 68073 ||||||||||||||||| || |||||||| ||||| | ||||||||| | ||||| ||| Sbjct 53421 GCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAG 53480 Query 68074 TTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATG 68133 ||||| || || || ||||| || | | ||| ||||| || || ||||| || ||| Sbjct 53481 TTGTTAAAGCTAGCGTATTGGAAAATTAATCTACCAAAGTAACCGTGAGCAGCTACGATG 53540 Query 68134 TTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTG 68193 |||||||| ||||| |||||||| ||||||||||| ||| |||||| | ||||| Sbjct 53541 TTGTAAGTTTCTTCCTCTTGACCAAACTTGTAACCTGCGTTAGCAGACTCATTCTCAGTA 53600 Query 68194 GTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCA 68253 |||||||| | | ||||| || | |||||||||||| |||||||| ||||| ||| Sbjct 53601 GTTTCACGGATTAAACTTGAAGTTACTAAGGAACCATGCATAGCACTGAATAGAGAGCCA 53660 Query 68254 CCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 68313 || ||||| ||||| || || ||||| ||||| |||||||| ||||||||||| || ||| Sbjct 53661 CCGAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 53720 Query 68314 TGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAAC 68373 |||||||| | |||| |||||||||||||||| || || | |||||| |||||||||| Sbjct 53721 TGGAACACAATCATGAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCGTCAGAGAAG 53780 Query 68374 GAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAG 68433 |||||||| | || |||| || ||| || || | || || |||||||| || || Sbjct 53781 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAA 53840 Query 68434 TATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCC 68493 ||||||||| |||||||||||||||||| | ||| ||| ||||||||| ||||| ||| Sbjct 53841 TATGCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCC 53900 Query 68494 ATGTATGCAA-AGATACCAATCAGGAAGTGAAAGATTACGAGT---TGGAAAGGACCACC 68549 ||||| |||| | ||||| | |||||| |||| |||| | | | |||||||||| Sbjct 53901 ATGTA-GCAAGCTACACCAAGTAAGAAGTG-AAGA--ACGATTAACTCGTAAGGACCACC 53956 Query 68550 ATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAAT 68609 ||||| | ||| ||||||| || || ||||||||||| || || ||||| | ||| || Sbjct 53957 GTTGTAAAGCCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAAACCGAT 54016 Query 68610 TGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACC 68669 || ||| |||| | | |||| |||| ||||||||||| || || ||||| ||||| Sbjct 54017 AGCTGCAGAAGTAGGGATGATAGCAGCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACC 54076 Query 68670 AGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGAT 68729 || |||||| ||||| |||||||| || || ||||| ||||| || ||||| || | || Sbjct 54077 AGAAACAGGCTCACGGATACCATCAATATCTACAGGAGGAGCTGCAATGAAAGCAATAAT 54136 Query 68730 GAA-ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGT 68788 || ||||| ||||| | | || ||||| ||||| | || |||||||| || | || Sbjct 54137 AAATACAGA-AGTTGCAGTTAATAGAGTAGGAATCATTAAAACACCGAACCATCCGATGT 54195 Query 68789 AAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 |||||||||| || ||| || ||||| |||||||| Sbjct 54196 AAAGGCGGTTTTCAGTGCTGGTAACCCAGTCGCAGAA 54232 Score = 605 bits (670), Expect = 3e-168 Identities = 743/1013 (73%), Gaps = 14/1013 (1%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || ||||||||||||| |||||||| || | Sbjct 43447 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCTGGGAATACAAGATTTTCATGAGGCT 43506 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || ||||| ||| ||||||| ||||||||| | ||||| || || ||||| | Sbjct 43507 GATCTTGAGCTGCCATCCAAGCACGAATACCTTCATTTAGAAGAATATTTTTAGTGTAAA 43566 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | || || || || |||||||| ||||| | || || || || ||||| |||||||| | Sbjct 43567 AAGTTTCAAATTCAGGGTCTTCAGCTGCACGAATTTCCTGAGAAACAAAATCATAAGCTC 43626 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | | || | ||| | ||||| | || || | ||| |||| | ||| | || || | Sbjct 43627 GTAAATTTAAAGCTAAACCAACTACTCCAATAGCACTCATCCATAAACCAGTTACTGGTA 43686 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| | |||||||||||||||||| | || || ||| |||| ||| ||||| |||| Sbjct 43687 CAAATAGCATAAAGAAATGCAACCAACGTTTGTTAGAAAATGCAACACCGAAGATTTGAG 43746 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 ||||||| ||||| || |||||||| || ||||||||||| |||||| | || || | Sbjct 43747 ACCAGAAACGGTTAGCTGTAACCATAGAATAAGTTTCTTCAGATTGAGTTGGGTTAAACG 43806 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| ||||| || |||||| Sbjct 43807 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTTGCACCAT 43866 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| | | | ||| | |||| || || || || |||||||||||||| |||| Sbjct 43867 GAATAGCACATAAAAGAGCAGCTCCCAAGACTCCAGCAACTCCCATCATATGAAATGGGT 43926 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 | || |||||||||||||| ||||| | ||| | || |||||| || ||||||| || | Sbjct 43927 TTAAAGTCCAGTTATGGAAACCTTGGAAGAATAAAATGAATCGGAAAATTGCTGCAACAC 43986 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || |||||||||| |||||||| || ||||| || | ||| ||| || Sbjct 43987 CAAAACTAGGTGCAAAAAACCAACCTGATTGACCAAGTGGGTAAATTAAAAATACAGAAA 44046 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGA----TACCGATG 67241 |||||||||| || || ||||| || ||||| || || || ||||| | ||| ||| Sbjct 44047 CAAAAACAGCAATTGGGCCAGAAAAAGCAATTGCGTTATAAGGACGTAATTGTACGGAT- 44105 Query 67242 AGACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGC 67301 | || || ||||| ||||| | ||| || || |||| ||| ||||| || || || Sbjct 44106 ---CTAGCAAGCTCAAATTGGCGCAACATAAAGCCTATTAAAGCAAAAGCTCCATGAAGA 44162 Query 67302 GCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCA 67361 || || ||| |||| || ||||| | ||| ||| || |||||| || || | || Sbjct 44163 GCAACGAAAGTCCATAGACCTCCTAATTGACACCAACGAGTGAAATCTCCTTGTGCTTCT 44222 Query 67362 GGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCT 67421 |||||||| | ||| | | ||||| | | | || |||||| || || ||||| || Sbjct 44223 GGACCCCATAATAGTAATAACGAATGTGCTAAACTATTAGCAGGAGTAGAAACAGCAGCA 44282 Query 67422 GTGAGAAAATTAGCACCCTCAAGATAA---CTAGACGCGAGTCCGTGAGTGTACCAGCTT 67478 || ||||||||| ||| || | |||| ||| || | ||| ||||| ||||| Sbjct 44283 GTTAGAAAATTACAACCTTCTAAATAAGAGCTA---GCCAATCCATGAGTATACCATGAA 44339 Query 67479 GTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGA 67538 || ||||| || ||||| |||| ||| ||||| | | | |||||| |||||||| Sbjct 44340 GTTACAAAAGTTGTACCTGTAAACCATCCACCTAAAGAAAAATAAGCGCACGGAAAAAGT 44399 Query 67539 AGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 | ||| ||||||||||| ||||| ||||| || |||| | | ||||||||||| Sbjct 44400 AATAGACCAGACCAACCTACAAATACAAAACGGTCTCTTCTTAGCCAGTCATC 44452 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||||||||||| ||||||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 93950 CTCCCCAGGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCACTG 94009 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 94010 AGCTACTGAGGA 94021 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||||||||||| ||||||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 114152 CTCCCCAGGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCACTG 114093 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 114092 AGCTACTGAGGA 114081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572040170146800