Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1943 116 5e-21 seq1886 114 2e-20 seq1762 107 3e-18 seq1705 84.2 3e-11 >seq1943 Length=2190071 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| || ||||| || || ||||| ||||||||||| ||| |||| Sbjct 1470072 ATGCAAATATTTGTTAAGACGTTGACGGGGAAGACTATCACATTAGAAGTGGAAAGTTCT 1470131 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| | ||| || || || |||||||| || || || || || Sbjct 1470132 GACACCATCGACAACGTGAAGACTAAGATTCAGGACAAAGAAGGAATTCCCCCGGATCAG 1470191 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | |||||| ||||| || |||||| | ||||| | ||||| || Sbjct 1470192 CAGAGACTTATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACTTTGGCTGATTACAAC 1470251 Query 156003 AT 156004 || Sbjct 1470252 AT 1470253 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | ||||| |||| || || || ||||| || ||||| || || Sbjct 1469844 ATGCAAATATTCGTCAAAACGCTGACGGGGAAGACGATTACGTTGGAAGTTGAGAGCTCA 1469903 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| || | || || ||||| |||||||| || || || || || Sbjct 1469904 GATACTATTGATAACGTTAAGACGAAGATTCAAGACAAAGAAGGTATTCCACCTGACCAG 1469963 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||||| |||||| |||||| | || ||| | ||| | | ||||| || Sbjct 1469964 CAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGGCGTACTCTGGCCGATTACAAC 1470023 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | |||||||| | ||||| | | || |||||| Sbjct 1470024 ATTCAGAAGGAGTCCACGCTTCACCTGGTGTTGCGCCTGAGGGGCGGT 1470071 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||||| || || | || || || ||| Sbjct 1470756 ATGCAGATTTTTGTAAAGACTCTGACTGGAAAAACAATCACTCTTGAGGTTGAGAGCTCT 1470815 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | ||| || || ||||| ||||| || ||||| || || Sbjct 1470816 GATACTATTGATAATGTTAAGACTAAGATCCAGGATAAGGAAGGTATTCCTCCCGACCAG 1470875 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| || || ||||| |||||| | ||| | | |||||||| Sbjct 1470876 CAACGGTTGATCTTTGCGGGCAAACAGCTGGAAGATGGTCGTACTCTTGCTGATTATAAC 1470935 Query 156003 AT 156004 || Sbjct 1470936 AT 1470937 >seq1886 Length=1372085 Score = 114 bits (126), Expect = 2e-20 Identities = 241/355 (68%), Gaps = 9/355 (3%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || |||||||| ||| | || ||||||| || || | |||||| |||||| | | Sbjct 694646 CATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAAACGTAAGC 694587 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | |||||| || || |||||||| || | ||||| | |||||||| Sbjct 694586 CCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGCGCAAAAACTCCCTGAAAAGAAA 694527 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || ||||| ||||| ||||| || | | ||| || ||||| || | || || Sbjct 694526 ATCCCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCACTG-TCG-- 694470 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTA 18397 ||||||||| | ||||| || | | | || ||||| |||| || ||||| Sbjct 694469 ATCCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCAATGGCATTG 694410 Query 18398 AACAAATCATCTTTT-TCT--TTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || || || || || || ||| |||||| || || | || | |||||| ||| Sbjct 694409 AA-AAGTCTGCTCTTCTCAGCTTG--ATCTTTAATGTACGCCTCCAACAACAAACTGTAC 694353 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 ||||| || || ||| | || ||||||||||| || | || |||| ||| |||| Sbjct 694352 ATTTCTGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAACGCTCTGGCCT 694298 >seq1762 Length=742324 Score = 107 bits (118), Expect = 3e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || |||||||| || || || || ||||| || || ||| ||| Sbjct 518971 ATGCAAATTTTTGTCAAGACATTGACGGGGAAGACGATAACATTGGAGGTGGAAAGTTCC 519030 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | || ||||| || || || ||||| ||||| || || Sbjct 519031 GATACTATTGATAATGTAAAGACAAAGATACAGGACAAGGAGGGCATCCCTCCCGACCAG 519090 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| |||||||| || ||||| | ||||| | ||||||| Sbjct 519091 CAGAGGCTTATTTTTGCAGGTAAGCAACTGGAAGACGGTCGTACTTTGGCTGATTATA-- 519148 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||||||| || |||| | ||| | ||||| | || || || ||| Sbjct 519149 ATATCCAAAAGGAATCGACCTTGCATCTTGTGTTGCGGTTGAGGGGAGGT 519198 >seq1705 Length=561313 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||| || || || || || | || ||||| ||| Sbjct 93386 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATCACGCTTGAGGTCGAGTCCTCT 93327 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||||| ||||| || || || || ||||| ||||| || ||| Sbjct 93326 GATACTATCGACAATGTGAAAACAAAAATTCAGGACAAGGAGGGCATTCCTCCCGATCAA 93267 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | |||||| ||||| ||||||||||||||| Sbjct 93266 CAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAAGAT 93231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731853794684000