Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1721 116 7e-21 seq1917 105 1e-17 seq1943 98.7 2e-15 seq1762 95.1 2e-14 seq1814 93.3 8e-14 >seq1721 Length=608652 Score = 116 bits (128), Expect = 7e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||||||||| |||| ||| || | || ||||| ||||| | ||| || |||||| || Sbjct 212977 AATAATACCTCCTCGAAGGCGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATATTGTA 212918 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 |||| | || || |||| || | || || || || || || | ||||| || || Sbjct 212917 GTCAGCAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGCCTCTGCTGGTC 212858 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || || || || || || || || ||||| | || |||||| |||| |||||| || Sbjct 212857 GGGAGGAATGCCCTCCTTGTCCTGGATTTTCGTCTTCACATTATCGATAGTATCTGATGA 212798 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || ||||||||||| || || || | || || | ||| |||||||| Sbjct 212797 TTCAACCTCGAGAGTAATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 212744 >seq1917 Length=1730829 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||||| | || || |||| || ||||| |||||||||||||| || | Sbjct 508312 GATATTGTAATCAGCAAGGGTGCGGCCATCTTCTAATTGCTTACCAGCAAAGATCAAACG 508253 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| || || || ||||| || ||||| ||||| | || || || || | Sbjct 508252 CTGCTGATCGGGCGGAATCCCTTCCTTGTCTTGGATTTTCGTCTTCACGTTGTCAATTGT 508193 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||| || || || || || |||||||| || || ||||||| ||| || || Sbjct 508192 GTCAGAGCTTTCGACCTCAAGCGTGATTGTTTTACCGGTCAAGGTTTTAACAAAGATTTG 508133 Query 192534 CAT 192536 ||| Sbjct 508132 CAT 508130 >seq1943 Length=2190071 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| || || || |||| |||| ||| || || |||||||| | |||| Sbjct 1470253 ATGTTGTAATCAGCCAAAGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATAAGTCTC 1470194 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || ||||||||||| || || || ||| | || || || || | Sbjct 1470193 TGCTGATCCGGGGGAATTCCTTCTTTGTCCTGAATCTTAGTCTTCACGTTGTCGATGGTG 1470134 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||| ||||||| || || || || || || || || |||| |||||| ||| Sbjct 1470133 TCAGAACTTTCCACTTCTAATGTGATAGTCTTCCCCGTCAACGTCTTAACAAATATTTGC 1470074 Query 192535 AT 192536 || Sbjct 1470073 AT 1470072 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || || || ||||| | || | || || |||| ||| ||| || ||||| ||||| Sbjct 1470757 ATCCCTCCCCTTAGACGAAGAACAAGGTGCAAGGTAGACTCCTTTTGA-ATATTGTAATC 1470699 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | || || | || || || || || ||||| || || | | ||| || ||||| Sbjct 1470698 GGCCAGAGTACGACCGTCCTCTAACTGCTTCCCAGCGAAAATCAGACGCTGCTGGTCAGG 1470639 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||||||||| || ||||| | || || || ||| | ||| || || Sbjct 1470638 AGGGATACCTTCTTTATCCTGGATTTTGGTCTTCACGTTGTCTATGGTATCAGAGCTCTC 1470579 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||||||||| || || ||||| || || || | ||| |||||||| Sbjct 1470578 AACCTCTAGAGTAATTGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 1470528 >seq1762 Length=742324 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || || | || || || | ||| || || | || || ||||||||||||| Sbjct 519200 ATACCTCCCCTCAACCGCAACACAAGATGCAAGGTCGATTCCTTTTGGATATTATAATCA 519141 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || |||| ||| ||||| ||||| || | ||||| || || || Sbjct 519140 GCCAAAGTACGACCGTCTTCCAGTTGCTTACCTGCAAAAATAAGCCTCTGCTGGTCGGGA 519081 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || ||||| || | ||||||||| |||| ||| || ||| Sbjct 519080 GGGATGCCCTCCTTGTCCTGTATCTTTGTCTTTACATTATCAATAGTATCGGAACTTTCC 519021 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || || || || || || ||||| || | ||| || ||||| Sbjct 519020 ACCTCCAATGTTATCGTCTTCCCCGTCAATGTCTTGACAAAAATTTGCAT 518971 >seq1814 Length=924488 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || | ||| || || | ||| || ||| || || ||| Sbjct 463321 ATACCACCTCTCAAGCGCAGAACCAGATGCAAGGTTGACTCCTTCTGGATGTTGTAGTCA 463262 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || |||||||| || || ||||| || || ||||| || || || Sbjct 463261 GCAAGGGTGCGCCCGTCTTCCAATTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCGGGC 463202 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || | || |||||| || | || || ||| Sbjct 463201 GGGATGCCCTCCTTATCCTGGATCTTTGTCTTCACATTATCAATTGTGTCCGAGCTCTCT 463142 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || |||||||| || || || || || || || | ||| ||||||||| Sbjct 463141 ACCTCGAGAGTAATCGTCTTCCCTGTCAAGGTCTTCACAAAAATCTGCATT 463091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984454898836500