Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1943 105 1e-17 seq1721 105 1e-17 seq1762 100 5e-16 seq1814 98.7 2e-15 >seq1943 Length=2190071 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171867 TGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGT 171926 || || |||| ||| || |||||| ||||| | | || || |||| || || || Sbjct 1470730 TGCAAGGTAGACTCCTTTTGAATATTGTAATCGGCCAGAGTACGACCGTCCTCTAACTGC 1470671 Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 || ||||| ||||| | | ||| |||||||| || || ||||||||||| || ||||| Sbjct 1470670 TTCCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGGATACCTTCTTTATCCTGGATTTTG 1470611 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 | || || || ||| ||||| || || || ||||||||||| || || ||||| Sbjct 1470610 GTCTTCACGTTGTCTATGGTATCAGAGCTCTCAACCTCTAGAGTAATTGTCTTGCCAGTC 1470551 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 || || || | || |||||||| Sbjct 1470550 AAAGTCTTCACAAAAATCTGCAT 1470528 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || || || || || | || | || | ||| || ||| || ||||| Sbjct 1470073 ATACCGCCCCTCAGGCGCAACACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATCG 1470014 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || ||||| || || || |||||||| |||| || ||||||||| Sbjct 1470013 GCCAGAGTACGCCCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGCTGGTCAGGT 1469954 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || | || || ||| ||||||||||| || Sbjct 1469953 GGAATACCTTCTTTGTCTTGAATCTTCGTCTTAACGTTATCAATAGTATCTGAGCTCTCA 1469894 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| || || || || | ||||| | |||||| ||||| Sbjct 1469893 ACTTCCAACGTAATCGTCTTCCCCGTCAGCGTTTTGACGAATATTTGCAT 1469844 >seq1721 Length=608652 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||||||| |||| ||| || | || ||||| ||||| | ||| || ||||| || Sbjct 212976 ATAATACCTCCTCGAAGGCGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATATTGTAG 212917 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || | | | || | || || | || || || || ||||| | ||||| ||||| Sbjct 212916 TCAGCAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGCCTCTGCTGGTCG 212857 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || || || || || || ||||| | || |||||| ||||||||||| ||| Sbjct 212856 GGAGGAATGCCCTCCTTGTCCTGGATTTTCGTCTTCACATTATCGATAGTATCTGATGAT 212797 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||||||||| || || || | || || | || |||||||| Sbjct 212796 TCAACCTCGAGAGTAATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 212744 >seq1762 Length=742324 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || | || || || | ||| || || | || || ||||||||||| Sbjct 519200 ATACCTCCCCTCAACCGCAACACAAGATGCAAGGTCGATTCCTTTTGGATATTATAATCA 519141 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || |||| |||| ||| ||||| |||||||| | ||||| ||||| || Sbjct 519140 GCCAAAGTACGACCGTCTTCCAGTTGCTTACCTGCAAAAATAAGCCTCTGCTGGTCGGGA 519081 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || ||||| || | ||||||||| |||||||| || ||| Sbjct 519080 GGGATGCCCTCCTTGTCCTGTATCTTTGTCTTTACATTATCAATAGTATCGGAACTTTCC 519021 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || || || || || ||||| || | || || ||||| Sbjct 519020 ACCTCCAATGTTATCGTCTTCCCCGTCAATGTCTTGACAAAAATTTGCAT 518971 >seq1814 Length=924488 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 ||||| |||||||| | ||| || ||| || || || | | || | |||| ||| Sbjct 463528 ACTAAGTGTAAAGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTCCCGTCTTCC 463469 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 ||||| || || |||||||| || ||||| ||||||||||| || || || || || || Sbjct 463468 AATTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGA 463409 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || | |||||||| || || || || || ||||| || ||||| || || Sbjct 463408 ATCTTCGTCTTTACATTGTCAATTGTGTCCGAGCTCTCAACTTCGAGGGTAATCGTCTTT 463349 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || | || |||||||| Sbjct 463348 CCCGTCAAGGTCTTCACAAAAATCTGCAT 463320 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || | ||| || || | ||| || || || || || Sbjct 463321 ATACCACCTCTCAAGCGCAGAACCAGATGCAAGGTTGACTCCTTCTGGATGTTGTAGTCA 463262 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| |||||||| || || |||||||| || ||||| ||||| || Sbjct 463261 GCAAGGGTGCGCCCGTCTTCCAATTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCGGGC 463202 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || || | || |||||| || || || || ||| Sbjct 463201 GGGATGCCCTCCTTATCCTGGATCTTTGTCTTCACATTATCAATTGTGTCCGAGCTCTCT 463142 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || |||||||| || || || || || || || | || ||||||||| Sbjct 463141 ACCTCGAGAGTAATCGTCTTCCCTGTCAAGGTCTTCACAAAAATCTGCATT 463091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905113484742000