Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1740 167 7e-36 seq1925 127 6e-24 seq1538 125 2e-23 seq1794 98.7 3e-15 seq1905 95.1 4e-14 seq1979 93.3 1e-13 seq1871 91.5 4e-13 >seq1740 Length=701575 Score = 167 bits (184), Expect = 7e-36 Identities = 232/317 (73%), Gaps = 10/317 (3%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| ||||||||| ||| | | || | |||||||||||||| || ||||| Sbjct 356858 CATAACATCTTCCATAGCCTTCACCAGCCGCCTTTGAATATAACCAGTCTCCGAAGTTTT 356799 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| ||||||| ||||||||||||||||| | || | || Sbjct 356798 CACAGCAGTATCAATAAGACCCTCACGACCTCCCATAGCATGGAAGAAAAATTCCTGGGG 356739 Query 302685 TCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCG 302742 | || | || | ||| | | || | || || || ||||| ||| ||| || |||| Sbjct 356738 T-GTCAATCCTCGCAA-ATATGAATTTTCTACAAATCCACGACTCTCTGGCCCATAGTCG 356681 Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGATACGCTTTCCATC 302801 ||| ||||| |||||||| || | | ||| || |||||||||| || ||||| || || Sbjct 356680 TCCTTTGTAAAATGTGGCAGTGTAC-GATCTACAAAGCCGTATGGAATTCGCTTCCCTTC 356622 Query 302802 AACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTG 302859 ||| |||||||| |||| || | | ||||||| |||||||| | ||| | ||||| Sbjct 356621 AACATTCTGCTGCCCCACACAAGCAGTCATCTGAGAAATATTGATGAAT--GTACCCTTT 356564 Query 302860 GAGCCAGCATTTACCAT 302876 || ||||| | ||||| Sbjct 356563 GACCCAGCTGTAACCAT 356547 >seq1925 Length=1847415 Score = 127 bits (140), Expect = 6e-24 Identities = 293/438 (67%), Gaps = 5/438 (1%) Strand=Plus/Plus Query 155841 TCACCGTAACAATCACTCAGTCCAGGGCACTT-ATCGGGGCAAAACAGCGACCAAATTTT 155899 ||||| ||||||| ||||| || | ||| || |||||| ||||| ||||| | Sbjct 481282 TCACCCCAACAATCCGCGAGTCCTGG-CGCTTCATTGGGGCAGAACAGAGACCATGTGCC 481340 Query 155900 ATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCT 155959 |||| ||||| | ||| || | || ||||| ||||||| | |||| Sbjct 481341 ATTATTTTGGACACGTTGCATGAAAAGGTCGGGGATCCAAAGTCCATAGAACAAATCCCG 481400 Query 155960 TGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGG 156019 || | ||||| | ||||| ||||| || || || || |||| ||||| | Sbjct 481401 AGCTCTACTTTCCTCCTTCCCGTGGTTCTTTCGAAGGTCCAACCATTCGAAGATATCTGC 481460 Query 156020 ATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTAC 156076 ||| || || || || || ||||| ||| |||||||| ||||||||| || || Sbjct 481461 ATGCCAGGGTTCAAGGTAAATTGCAAACGCACCCTTCCTCTTACCGCCACCCTGGTCAAC 481520 Query 156077 ATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATT 156136 |||||| ||||| | ||| || || | ||||| || || |||||||||||||| ||||| Sbjct 481521 ATACCGGGCAGTGTCATTAAACACCCTCAGCATGGGGATTATACCATTGGAAGTTCCATT 481580 Query 156137 GGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACC 156196 ||| || || || | || | | ||| | ||||| | | || ||||| ||||| Sbjct 481581 GGTGCCCCGGATGTAGCTGCCTGTCGTGCGGATGTTATGGACAGACAGGCCAATGCCACC 481640 Query 156197 TGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATC 156256 | | | || |||| ||| || ||||| | |||| | |||| || |||||| || Sbjct 481641 GGCCGACTTGCTAATTACAGCACACTCCTTCAGGGTATCGTAAATCCCCTCAATACTGTC 481700 Query 156257 ATCTTCCATTGATAGTAG 156274 || || ||| | ||||| Sbjct 481701 ATTTTTCATGCACAGTAG 481718 >seq1538 Length=191664 Score = 125 bits (138), Expect = 2e-23 Identities = 197/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || || ||||| || || |||||||||||||||||||| ||||| | | || ||| Sbjct 170995 TGGATGTAACCGGTCTCCGAAGTTTTTACAGCTGTATCAATGAGACCTTCTCTTCCTCCC 170936 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 ||||||||||| || | || | || || || | | | | || | || || || Sbjct 170935 ATAGCATGGAAAAAGAATTCCTGTGGAGTCAGGCCTCGCAAATATGAATTTTCTACAAAT 170876 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| ||| ||| || |||| ||| ||||| ||||| || || | || | || | Sbjct 170875 CCACGACTCTCAGGCCCATAGTCGTCCTTTGTAAAATGTGGTAGCGTACGGTCCACAAAA 170816 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 ||||| || |||||||| || ||||| || ||||| |||| || | | |||| || ||| Sbjct 170815 CCGTACGGAATACGCTTCCCCTCAACATTTTGCTGCCCCACACAGGCAGTCATTTGGGAA 170756 Query 302839 ATATT--TAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| ||||| | ||||| || ||||| | ||||| Sbjct 170755 ATATTGATAAAT--GTACCCTTCGACCCAGCTGTAACCAT 170718 >seq1794 Length=856596 Score = 98.7 bits (108), Expect = 3e-15 Identities = 213/318 (67%), Gaps = 3/318 (1%) Strand=Plus/Minus Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAG 155995 ||| | | ||||||| || || | ||| | ||||| | || |||||||||| || Sbjct 303874 CCACAGACCATAGAATAGATCTCGAGCCCTATTTTCCTCCTTCCCATGATTCTTCCTAAG 303815 Query 155996 CTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATT 156055 || | | || ||||| | ||| ||||||||||| ||||| ||| || || Sbjct 303814 ATCCAGCCAATCGAATATATCGGCATGCCACGGCTCCAGATAGATAGCGAAAGCGCCCTT 303755 Query 156056 CCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGG 156112 |||||| ||||||||| || || |||||||| || | |||||| || | | ||| || Sbjct 303754 CCTCTTGCCGCCACCCTGGTCGACGTACCGAGCTGTGTCATTGAATACCCTCAACATCGG 303695 Query 156113 AATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATT 156172 || || ||||| ||||| || || || || ||||| | |||| | || | ||| Sbjct 303694 GATGATCCCATTAGAAGTCCCGTTTGTGCCACGAATGTAGCTGCCAGTAGCACGGATATT 303635 Query 156173 ATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGT 156232 ||||| | ||||| ||||| | | || ||| ||| || ||||| | ||| Sbjct 303634 ATGAACTGACAAACCAATTCCACCAGCTGACTTGCTAATAACAGCACACTCCTTCAGAGT 303575 Query 156233 ATTGAAAATACCTTCAAT 156250 | | | ||||| ||||| Sbjct 303574 GTCGTAGATACCCTCAAT 303557 >seq1905 Length=1584080 Score = 95.1 bits (104), Expect = 4e-14 Identities = 181/262 (69%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || | |||||| | | ||| || || || | |||||||||| | ||| ||| Sbjct 1343360 GGCAATGATACCACAATGCTCACAAACGTGAACTCGGTAAGCATCACTTTGATCAAATAA 1343301 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || |||| ||| ||| ||||||||| | ||||||||||| | ||||| || || Sbjct 1343300 GCGCTCCTTCAGGAAATGAGCTGCACCGTGAGCGATCATACAATCTCTTTCCATCTCTCC 1343241 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT-GAGATTAACCA 251581 || || | ||| ||||| | | | ||| || |||||||| || || ||||| || Sbjct 1343240 AAACCGCAAACCTCCATCCCTGGATCGACCTTCTGCAGGCTGTCGTGTCAAGATT-TGCA 1343182 Query 251582 TAGGACCGATGGAGCGGCT--ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTA 251639 |||||| | | | | ||| |||||||| |||||||||||||| |||||||| Sbjct 1343181 CAGGACC--TCGTCCCCTTGAATGAATCTTATCATCAACCATATGCTTGAGTCGCTGGTA 1343124 Query 251640 GAATGCGGGACCGATGAAGATG 251661 | | ||||| | |||||| Sbjct 1343123 ATAAGTAGGACCCAAAAAGATG 1343102 >seq1979 Length=3181686 Score = 93.3 bits (102), Expect = 1e-13 Identities = 219/327 (67%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| |||||||| || || ||||||| | || || | || | | || || | Sbjct 1435959 CCAACGGCATCAATCTCATCGATGAAAACGATGCAAGGGGCCTTCGCTTTGGCCTTTTCG 1435900 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || || | |||||||| ||||| | ||||||| | | ||| || ||||| || || Sbjct 1435899 AACAAATCACGAACACGGGAAGCTCCCACACCAACAAAGAGTTCGACGAATTCGGAGGCT 1435840 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | | ||| | ||||| ||| || || || | || || || || || | ||||| Sbjct 1435839 GCG-CATGAGAAGAATGGGACACCAGCCTCTCCGGAAACAGCTCTTGCGAGCAAAGTCTT 1435781 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC---AGCAGA 289265 |||||||||||||| || | | ||| |||||| || | || || || |||| Sbjct 1435780 TCCTGTTCCAGGTGGGCCGACGAGCAGACATCCCTTGGGAATCTTAGCACCGAGGGCAG- 1435722 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | ||||| || ||| |||| || || || |||| || | ||||| | || || | Sbjct 1435721 --TGTATTTGTCGGGGTTCTTCAAGAAATCGACAACCTCTTGTAGTTCCAACTTGGCTTG 1435664 Query 289326 ATCACATCCTGCTACATCAGCAAAAGT 289352 |||| ||| || || ||||| || || Sbjct 1435663 ATCAGCTCCGGCAACGTCAGCGAAGGT 1435637 >seq1871 Length=1245209 Score = 91.5 bits (100), Expect = 4e-13 Identities = 213/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| |||||||| || || | || | | || |||| ||| | | |||| | Sbjct 820394 CCAACGGCATCAATCTCATCCACAAACACAATGCAGGGAGCATTCTCTTTCGCCTTCTTG 820453 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || || || |||||||| ||||| | || || ||||||| || || ||||| | Sbjct 820454 AACAAGTCCCTCACACGGGAAGCTCCCACTCCCACGAACATTTCCACGAACTCAGACCCA 820513 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | | || | ||||| ||| ||||| || || | ||| |||||| || ||||| Sbjct 820514 GAGA-TGGAGAAGAATGGTACTCCAGCTTCCCCAGCGATGGCCTTCGCCAATAGAGTCTT 820572 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || || || |||||||| | | | ||||||||||| | ||| || || | | | Sbjct 820573 TCCGGTACCGGGTGGTCCAACCAGCAACACTCCCTTTGGGATTTTAGCGCCCACTGCTGT 820632 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTGCCTCAT 289327 || ||||||| | ||| || || || |||| ||| | ||| || | || ||||| | Sbjct 820633 GAATCTCTCAGGCCGCTTCAAGAACTCCACAACCTCCATGAAG-TCTTGCTTGGCCTCGT 820691 Query 289328 CACATCCTGCTACATC 289343 | ||| || ||||| Sbjct 820692 CTACTCCCGCAACATC 820707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471780073250630