Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq1990 740 0.0 >seq1990 Length=122890 Score = 740 bits (820), Expect = 0.0 Identities = 767/998 (77%), Gaps = 10/998 (1%) Strand=Plus/Minus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| || |||||||||||| ||| | ||||| || || |||| ||||||||||| | Sbjct 54233 CTTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTT 54174 Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCC 150957 |||||||| ||||| || | ||||| | || || | || ||||| || ||||| Sbjct 54173 AATGATTCCTACTCTATTAACTGCAACTTCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 ||||| || || ||||| |||||||| || ||| |||||||||| | ||||| ||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 ||||||||||| |||| | | ||| ||||| ||||||||| |||||||||| || || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCA---ACTCGT 151134 |||||||| || || | ||||||||||| |||||||||||||||| | | | |||| Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 151135 TGTCTTCCACTTCCTGATTGGTAT--CTATGCTTACATGGGTCGTGAGTGGGAACTGTCT 151192 | |||| ||||| | ||||| | || |||| |||||||||||||||||||||| Sbjct 53933 T--CTTC-ACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGC 53879 Query 151193 TACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTTGCTGCTGCG 151252 ||||| || ||||||||||| |||||| |||||||| || ||||| ||||| ||||| Sbjct 53878 TACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCT 53819 Query 151253 AGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTG 151312 | ||| || ||| | |||| || | |||||||| |||||||| | ||||| | Sbjct 53818 ACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTA 53759 Query 151313 GGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATG 151372 || || ||||| || ||||||| |||| |||| |||||||| || |||||||| || ||| Sbjct 53758 GGAATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATG 53699 Query 151373 CACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATG 151432 ||||| ||||| ||||||||||| |||||||| |||||||| || || ||| || ||| Sbjct 53698 CACCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATG 53639 Query 151433 CACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAAC 151492 || ||||| | || ||||| | | ||||| || || || || ||||| ||| Sbjct 53638 CATGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAAC 53579 Query 151493 TATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTAC 151552 ||||||||||| |||||||| ||||| || ||||||||||| || || ||||||||| Sbjct 53578 GCAGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTAC 53519 Query 151553 TTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTC 151612 |||||| | | || |||||||||||| ||| ||||| || ||||| | ||||||||| Sbjct 53518 TTTGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTC 53459 Query 151613 CTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCA 151672 | || || |||||||| || |||||||||||||||||| | ||| ||||||| ||||| Sbjct 53458 TTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCT 53399 Query 151673 TTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTG 151732 |||||| | |||||||||||||||||||| || | | || |||| || || | Sbjct 53398 TTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATT 53339 Query 151733 AACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGT 151792 ||||| ||||| ||| | | |||||||| || ||||||||||||||||| || ||| Sbjct 53338 AACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 53279 Query 151793 AATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 151830 || ||||||||||||||||| ||| | ||| ||| ||| Sbjct 53278 AACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 607 bits (672), Expect = 9e-169 Identities = 739/1007 (73%), Gaps = 8/1007 (1%) Strand=Plus/Minus Query 152369 TGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 152428 ||||||||||||| | ||||||||||| || ||||| ||||||||||| || | |||| Sbjct 44454 TGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTT 44395 Query 152429 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTT 152488 |||| |||||| || || | || || ||| |||| || || ||||| | || | Sbjct 44394 TTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCAT 44335 Query 152489 GGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAG 152548 |||||||||| || ||||| || || ||| | || || || ||||| ||||| || | Sbjct 44334 GGTATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTG 44275 Query 152549 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 152608 |||||||||| || || | | | ||||| | | || | |||||||| || || | Sbjct 44274 TTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCAC 44215 Query 152609 AAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACG 152668 |||| |||||| | ||| ||| | ||||| || ||| |||| || || || || | Sbjct 44214 AAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATG 44155 Query 152669 GGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGGTA 152728 | ||||| ||| |||| || || ||| | ||||| ||||| || || | ||| ||| Sbjct 44154 GAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAG----ATCCGTA 44099 Query 152729 ----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTC 152784 | ||||| || || || ||||| || ||||| || || |||||||||||| || Sbjct 44098 CAATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTA 44039 Query 152785 TTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCA 152844 ||| | || ||||| || |||||||| |||||||||| || || ||| || || ||| Sbjct 44038 TTTTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCA 43979 Query 152845 GCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTT 152904 ||||| ||||||||| || | ||| | ||||| ||||| |||||||| || || || ||| Sbjct 43978 GCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTT 43919 Query 152905 CATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTT 152964 ||||||||||| ||||| || | ||||||| || | | | ||| |||||||||| Sbjct 43918 CATATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCA 43859 Query 152965 ACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGAC 153024 || ||||| |||||||| | | |||||||||| ||||| || ||| || || || Sbjct 43858 ACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAAC 43799 Query 153025 AGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATA 153084 |||||| ||||| || ||||| |||||||| ||||||||||||||||| || || Sbjct 43798 CCAACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATC 43739 Query 153085 TTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTT 153144 || || |||| ||| || ||||| ||| | |||||||||||||| |||||||| || Sbjct 43738 TTCGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTA 43679 Query 153145 ATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTAC 153204 | ||| | |||| | |||||||| | ||||| | ||| | ||| | || ||||| Sbjct 43678 ACTGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTAT 43619 Query 153205 GATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACG 153264 |||||||| ||||| ||||| | || | ||||| ||||||||||| || || || || Sbjct 43618 GATTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACT 43559 Query 153265 AAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCAT 153324 || ||||| ||| | || |||||| ||||||||||| ||||| || || || |||||| Sbjct 43558 AAAAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCAT 43499 Query 153325 GAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 || || | || ||||| || ||||| | ||||| || |||||||| Sbjct 43498 GAAAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549608728142800